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Biorxiv : the Preprint Server for Biology
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June 12, 2025
A Gene Set Foundation Model Pre-Trained on a Massive Collection of Diverse Gene Sets
Daniel J B Clarke, Giacomo B Marino, Avi Ma'ayan
Nucleic Acids Research
|
May 1, 2025
L2S2: chemical perturbation and CRISPR KO LINCS L1000 signature search engine
Giacomo B Marino, John E Evangelista, Daniel J B Clarke, et al.
Biorxiv : the Preprint Server for Biology
|
April 22, 2024
RummaGEO: Automatic Mining of Human and Mouse Gene Sets from GEO
Giacomo B Marino, Daniel J B Clarke, Eden Z Deng, et al.
Gigascience
|
April 10, 2025
GeneSetCart: assembling, augmenting, combining, visualizing, and analyzing gene sets
Giacomo B Marino, Stephanie Olaiya, John Erol Evangelista, et al.
Patterns (New York, N.Y.)
|
November 21, 2024
RummaGEO: Automatic mining of human and mouse gene sets from GEO
Giacomo B Marino, Daniel J B Clarke, Alexander Lachmann, et al.
Bioinformatics Advances
|
October 13, 2025
sc2DAT: workflow for targeting tumor subpopulations of single cells
Giacomo B Marino, Anna I Byrd, Nasheath Ahmed, et al.
Nucleic Acids Research
|
May 11, 2023
Enrichr-KG: bridging enrichment analysis across multiple libraries
John Erol Evangelista, Zhuorui Xie, Giacomo B Marino, et al.
Aging Cell
|
April 21, 2023
Computational screen to identify potential targets for immunotherapeutic identification and removal of senescence cells
Eden Z Deng, Reid H Fleishman, Zhuorui Xie, et al.
Communications Biology
|
April 20, 2024
Rummagene: massive mining of gene sets from supporting materials of biomedical research publications
Daniel J B Clarke, Giacomo B Marino, Eden Z Deng, et al.
Journal of Molecular Biology
|
March 26, 2025
lncRNAlyzr: Enrichment Analysis for lncRNA Sets
John Erol Evangelista, Tahleel Ali-Nasser, Lauren E Malek, et al.
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of 3
Search research articles
Search
Showing results (1-10 of 21) with videos related to
Sort By:
Page
of 3
Biorxiv : the Preprint Server for Biology
|
June 12, 2025
A Gene Set Foundation Model Pre-Trained on a Massive Collection of Diverse Gene Sets
Daniel J B Clarke, Giacomo B Marino, Avi Ma'ayan
Nucleic Acids Research
|
May 1, 2025
L2S2: chemical perturbation and CRISPR KO LINCS L1000 signature search engine
Giacomo B Marino, John E Evangelista, Daniel J B Clarke, et al.
Biorxiv : the Preprint Server for Biology
|
April 22, 2024
RummaGEO: Automatic Mining of Human and Mouse Gene Sets from GEO
Giacomo B Marino, Daniel J B Clarke, Eden Z Deng, et al.
Gigascience
|
April 10, 2025
GeneSetCart: assembling, augmenting, combining, visualizing, and analyzing gene sets
Giacomo B Marino, Stephanie Olaiya, John Erol Evangelista, et al.
Patterns (New York, N.Y.)
|
November 21, 2024
RummaGEO: Automatic mining of human and mouse gene sets from GEO
Giacomo B Marino, Daniel J B Clarke, Alexander Lachmann, et al.
Bioinformatics Advances
|
October 13, 2025
sc2DAT: workflow for targeting tumor subpopulations of single cells
Giacomo B Marino, Anna I Byrd, Nasheath Ahmed, et al.
Nucleic Acids Research
|
May 11, 2023
Enrichr-KG: bridging enrichment analysis across multiple libraries
John Erol Evangelista, Zhuorui Xie, Giacomo B Marino, et al.
Aging Cell
|
April 21, 2023
Computational screen to identify potential targets for immunotherapeutic identification and removal of senescence cells
Eden Z Deng, Reid H Fleishman, Zhuorui Xie, et al.
Communications Biology
|
April 20, 2024
Rummagene: massive mining of gene sets from supporting materials of biomedical research publications
Daniel J B Clarke, Giacomo B Marino, Eden Z Deng, et al.
Journal of Molecular Biology
|
March 26, 2025
lncRNAlyzr: Enrichment Analysis for lncRNA Sets
John Erol Evangelista, Tahleel Ali-Nasser, Lauren E Malek, et al.
Page
of 3