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Bioinformatics Advances|February 23, 2023
SCAMPP+FastTree: improving scalability for likelihood-based phylogenetic placementGillian Chu, Tandy WarnowBioinformatics (Oxford, England)|January 10, 2023
UPP2: fast and accurate alignment of datasets with fragmentary sequencesMinhyuk Park, Stefan Ivanovic, Gillian Chu, et al.Methods in Molecular Biology (Clifton, N.J.)|December 8, 2020
Revisiting Evaluation of Multiple Sequence Alignment MethodsTandy WarnowPlos Currents|June 12, 2015
Concatenation Analyses in the Presence of Incomplete Lineage SortingTandy WarnowPlos Currents|March 31, 2012
Standard maximum likelihood analyses of alignments with gaps can be statistically inconsistentTandy WarnowMethods in Molecular Biology (Clifton, N.J.)|October 31, 2013
Large-scale multiple sequence alignment and tree estimation using SATéKevin Liu, Tandy WarnowPhilosophical Transactions of the Royal Society of London. Series B, Biological Sciences|August 22, 2022
Recent progress on methods for estimating and updating large phylogeniesPaul Zaharias, Tandy WarnowBioinformatics Advances|March 27, 2023
WITCH-NG: efficient and accurate alignment of datasets with sequence length heterogeneityBaqiao Liu, Tandy WarnowBMC Bioinformatics|December 14, 2011
Fast and accurate methods for phylogenomic analysesJimmy Yang, Tandy WarnowJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|February 23, 2022
Scalable Species Tree Inference with External ConstraintsBaqiao Liu, Tandy WarnowPageof 14