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Biorxiv : the Preprint Server for Biology|June 4, 2026
Min-frame transformation enables more sensitive viral genome alignmentRyan D Doughty, Ankhi Banerjee, Bryce Kille, et al.Algorithms for Molecular Biology : AMB|January 9, 2020
Non-parametric correction of estimated gene trees using TRACTIONSarah Christensen, Erin K Molloy, Pranjal Vachaspati, et al.Algorithms for Molecular Biology : AMB|June 29, 2021
Using Robinson-Foulds supertrees in divide-and-conquer phylogeny estimationXilin Yu, Thien Le, Sarah A Christensen, et al.Bioinformatics (Oxford, England)|June 13, 2012
DACTAL: divide-and-conquer trees (almost) without alignmentsSerita Nelesen, Kevin Liu, Li-San Wang, et al.IEEE/ACM Transactions on Computational Biology and Bioinformatics|August 6, 2020
Using Constrained-INC for Large-Scale Gene Tree and Species Tree EstimationThien Le, Aaron Sy, Erin K Molloy, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|December 31, 2014
PASTA: Ultra-Large Multiple Sequence Alignment for Nucleotide and Amino-Acid SequencesSiavash Mirarab, Nam Nguyen, Sheng Guo, et al.IEEE/ACM Transactions on Computational Biology and Bioinformatics|November 7, 2006
Pattern identification in biogeographyGaneshkumar Ganapathy, Barbara Goodson, Robert Jansen, et al.BMC Genomics|October 10, 2015
A comparative study of SVDquartets and other coalescent-based species tree estimation methodsJed Chou, Ashu Gupta, Shashank Yaduvanshi, et al.Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|February 27, 2003
Towards the development of computational tools for evaluating phylogenetic network reconstruction methodsLuay Nakhleh, Jerry Sun, Tandy Warnow, et al.Journal of Molecular Evolution|October 6, 2006
Distance-based genome rearrangement phylogenyLi-San Wang, Tandy Warnow, Bernard M E Moret, et al.Pageof 14