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BMC Genomics|April 18, 2020
Unblended disjoint tree merging using GTM improves species tree estimationVladimir Smirnov, Tandy WarnowMethods in Molecular Biology (Clifton, N.J.)|December 8, 2020
Multiple Sequence Alignment for Large Heterogeneous Datasets Using SATé, PASTA, and UPPTandy Warnow, Siavash MirarabSystematic Biology|March 28, 2015
On the Robustness to Gene Tree Estimation Error (or lack thereof) of Coalescent-Based Species Tree MethodsSebastien Roch, Tandy WarnowSystematic Biology|July 22, 2020
Phylogeny Estimation Given Sequence Length HeterogeneityVladimir Smirnov, Tandy WarnowAlgorithms for Molecular Biology : AMB|July 19, 2023
Weighted ASTRID: fast and accurate species trees from weighted internode distancesBaqiao Liu, Tandy WarnowMolecular Phylogenetics and Evolution|March 14, 2018
SVDquest: Improving SVDquartets species tree estimation using exact optimization within a constrained search spacePranjal Vachaspati, Tandy WarnowBMC Genomics|May 11, 2018
SIESTA: enhancing searches for optimal supertrees and species treesPranjal Vachaspati, Tandy WarnowBioinformatics (Oxford, England)|November 30, 2020
MAGUS: Multiple sequence Alignment using Graph clUSteringVladimir Smirnov, Tandy WarnowBioinformatics Advances|May 2, 2023
HMMerge: an ensemble method for multiple sequence alignmentMinhyuk Park, Tandy WarnowBioinformatics (Oxford, England)|September 25, 2016
FastRFS: fast and accurate Robinson-Foulds Supertrees using constrained exact optimizationPranjal Vachaspati, Tandy WarnowPageof 14