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Systematic Biology|October 14, 2017
To Include or Not to Include: The Impact of Gene Filtering on Species Tree Estimation MethodsErin K Molloy, Tandy WarnowAlgorithms for Molecular Biology : AMB|February 2, 2018
Gene tree parsimony for incomplete gene trees: addressing true biological lossMd Shamsuzzoha Bayzid, Tandy WarnowBioinformatics (Oxford, England)|July 12, 2013
Naive binning improves phylogenomic analysesMd Shamsuzzoha Bayzid, Tandy WarnowBioinformatics (Oxford, England)|July 14, 2020
FastMulRFS: fast and accurate species tree estimation under generic gene duplication and loss modelsErin K Molloy, Tandy WarnowJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|June 16, 2012
Estimating optimal species trees from incomplete gene trees under deep coalescenceMd Shamsuzzoha Bayzid, Tandy WarnowAlgorithms for Molecular Biology : AMB|July 31, 2019
Statistically consistent divide-and-conquer pipelines for phylogeny estimation using NJMergeErin K Molloy, Tandy WarnowJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|January 5, 2022
Re-evaluating Deep Neural Networks for Phylogeny Estimation: The Issue of Taxon SamplingPaul Zaharias, Martin Grosshauser, Tandy WarnowIEEE/ACM Transactions on Computational Biology and Bioinformatics|April 26, 2022
SCAMPP: Scaling Alignment-Based Phylogenetic Placement to Large TreesEleanor Wedell, Yirong Cai, Tandy WarnowJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|October 30, 2023
QR-STAR: A Polynomial-Time Statistically Consistent Method for Rooting Species Trees Under the CoalescentYasamin Tabatabaee, Sebastien Roch, Tandy WarnowBioinformatics (Oxford, England)|July 28, 2021
Accurate large-scale phylogeny-aware alignment using BAli-PhyMaya Gupta, Paul Zaharias, Tandy WarnowPageof 14