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Algorithms for Molecular Biology : AMB|April 21, 2011
An experimental study of Quartets MaxCut and other supertree methodsM Shel Swenson, Rahul Suri, C Randal Linder, et al.Genome Biology|June 17, 2015
Ultra-large alignments using phylogeny-aware profilesNam-Phuong D Nguyen, Siavash Mirarab, Keerthana Kumar, et al.Systematic Biology|September 22, 2011
SuperFine: fast and accurate supertree estimationM Shel Swenson, Rahul Suri, C Randal Linder, et al.Science (New York, N.Y.)|June 23, 2009
Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic treesKevin Liu, Sindhu Raghavan, Serita Nelesen, et al.Bioinformatics (Oxford, England)|November 1, 2014
TIPP: taxonomic identification and phylogenetic profilingNam-Phuong Nguyen, Siavash Mirarab, Bo Liu, et al.Algorithms for Molecular Biology : AMB|January 6, 2010
A simulation study comparing supertree and combined analysis methods using SMIDGenM Shel Swenson, François Barbançon, Tandy Warnow, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|August 20, 2005
Reconstructing reticulate evolution in species-theory and practiceLuay Nakhleh, Tandy Warnow, C Randal Linder, et al.Proceedings. IEEE Computational Systems Bioinformatics Conference|February 2, 2006
Rec-I-DCM3: a fast algorithmic technique for reconstructing large phylogenetic treesUsman W Roshan, Bernard M Moret, Tandy Warnow, et al.IEEE/ACM Transactions on Computational Biology and Bioinformatics|January 31, 2009
Barking up the wrong treelength: the impact of gap penalty on alignment and tree accuracyKevin Liu, Serita Nelesen, Sindhu Raghavan, et al.Systematic Biology|August 27, 2021
DISCO: Species Tree Inference using Multicopy Gene Family Tree DecompositionJames Willson, Mrinmoy Saha Roddur, Baqiao Liu, et al.Pageof 14