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Methods in Molecular Biology (Clifton, N.J.)
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September 16, 2024
Integrative Modeling of 3D Genome Organization by Bayesian Molecular Dynamics Simulations with Hi-C Metainference
Giovanni B Brandani
Plos Computational Biology
|
November 6, 2018
Chromatin remodelers couple inchworm motion with twist-defect formation to slide nucleosomal DNA
Giovanni B Brandani, Shoji Takada
Plos Computational Biology
|
July 27, 2021
The kinetic landscape of nucleosome assembly: A coarse-grained molecular dynamics study
Giovanni B Brandani, Cheng Tan, Shoji Takada
Nucleic Acids Research
|
May 26, 2026
Physics-based nucleosome-resolution modeling of epigenetic-driven chromatin domain dynamics
Chenyang Gu, Shoji Takada, Giovanni B Brandani
Elife
|
September 23, 2025
Multiphase separation in postsynaptic density regulated by membrane geometry via interaction valency and volume
Risa Yamada, Giovanni B Brandani, Shoji Takada
Current Opinion in Structural Biology
|
January 6, 2020
Nucleosomes as allosteric scaffolds for genetic regulation
Shoji Takada, Giovanni B Brandani, Cheng Tan
Nucleic Acids Research
|
March 6, 2018
DNA sliding in nucleosomes via twist defect propagation revealed by molecular simulations
Giovanni B Brandani, Toru Niina, Cheng Tan, et al.
Nucleic Acids Research
|
August 8, 2021
The lane-switch mechanism for nucleosome repositioning by DNA translocase
Fritz Nagae, Giovanni B Brandani, Shoji Takada, et al.
Current Opinion in Structural Biology
|
October 24, 2022
Molecular dynamics simulations for the study of chromatin biology
Giovanni B Brandani, Soundhararajan Gopi, Masataka Yamauchi, et al.
Plos Computational Biology
|
April 4, 2025
Molecular dynamics simulations of human cohesin subunits identify DNA binding sites and their potential roles in DNA loop extrusion
Chenyang Gu, Shoji Takada, Giovanni B Brandani, et al.
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Search research articles
Search
Showing results (1-10 of 21) with videos related to
Sort By:
Page
of 3
Methods in Molecular Biology (Clifton, N.J.)
|
September 16, 2024
Integrative Modeling of 3D Genome Organization by Bayesian Molecular Dynamics Simulations with Hi-C Metainference
Giovanni B Brandani
Plos Computational Biology
|
November 6, 2018
Chromatin remodelers couple inchworm motion with twist-defect formation to slide nucleosomal DNA
Giovanni B Brandani, Shoji Takada
Plos Computational Biology
|
July 27, 2021
The kinetic landscape of nucleosome assembly: A coarse-grained molecular dynamics study
Giovanni B Brandani, Cheng Tan, Shoji Takada
Nucleic Acids Research
|
May 26, 2026
Physics-based nucleosome-resolution modeling of epigenetic-driven chromatin domain dynamics
Chenyang Gu, Shoji Takada, Giovanni B Brandani
Elife
|
September 23, 2025
Multiphase separation in postsynaptic density regulated by membrane geometry via interaction valency and volume
Risa Yamada, Giovanni B Brandani, Shoji Takada
Current Opinion in Structural Biology
|
January 6, 2020
Nucleosomes as allosteric scaffolds for genetic regulation
Shoji Takada, Giovanni B Brandani, Cheng Tan
Nucleic Acids Research
|
March 6, 2018
DNA sliding in nucleosomes via twist defect propagation revealed by molecular simulations
Giovanni B Brandani, Toru Niina, Cheng Tan, et al.
Nucleic Acids Research
|
August 8, 2021
The lane-switch mechanism for nucleosome repositioning by DNA translocase
Fritz Nagae, Giovanni B Brandani, Shoji Takada, et al.
Current Opinion in Structural Biology
|
October 24, 2022
Molecular dynamics simulations for the study of chromatin biology
Giovanni B Brandani, Soundhararajan Gopi, Masataka Yamauchi, et al.
Plos Computational Biology
|
April 4, 2025
Molecular dynamics simulations of human cohesin subunits identify DNA binding sites and their potential roles in DNA loop extrusion
Chenyang Gu, Shoji Takada, Giovanni B Brandani, et al.
Page
of 3