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Nature Communications|March 4, 2020
Transient genome-wide interactions of the master transcription factor NLP7 initiate a rapid nitrogen-response cascadeJosé M Alvarez, Anna-Lena Schinke, Matthew D Brooks, et al.The Plant Cell|February 17, 2024
Nitrogen sensing and regulatory networks: it's about time and spaceCarly M Shanks, Karin Rothkegel, Matthew D Brooks, et al.Biorxiv : the Preprint Server for Biology|August 6, 2025
HDACs repress runaway stress and cell identity to promote reprogramming in root regenerationRamin Rahni, Bruno Guillotin, Laura R Lee, et al.Nature Protocols|July 21, 2012
High-throughput fluorescence-based isolation of live C. elegans larvaeAnita G Fernandez, Bastiaan O R Bargmann, Emily K Mis, et al.The Plant Cell|May 14, 2025
Model-to-crop conserved NUE Regulons enhance machine learning predictions of nitrogen use efficiencyJi Huang, Chia-Yi Cheng, Matthew D Brooks, et al.Plos One|June 9, 2009
The impact of outgroup choice and missing data on major seed plant phylogenetics using genome-wide EST dataJose Eduardo de la Torre-Bárcena, Sergios-Orestis Kolokotronis, Ernest K Lee, et al.Proceedings of the National Academy of Sciences of the United States of America|July 27, 2011
High nitrogen insensitive 9 (HNI9)-mediated systemic repression of root NO3- uptake is associated with changes in histone methylationThomas Widiez, El Sayed El Kafafi, Thomas Girin, et al.Plant Physiology|February 25, 2021
ConnecTF: A platform to integrate transcription factor-gene interactions and validate regulatory networksMatthew D Brooks, Che-Lun Juang, Manpreet Singh Katari, et al.Genome Biology|May 1, 2015
The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plantsYing Li, Indrani Mukherjee, Karen E Thum, et al.Cell|May 24, 2016
Root Regeneration Triggers an Embryo-like Sequence Guided by Hormonal InteractionsIdan Efroni, Alison Mello, Tal Nawy, et al.Pageof 14