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Nucleic Acids Research|May 10, 2022
DEPCOD: a tool to detect and visualize co-evolution of protein domainsFei Ji, Gracia Bonilla, Rustem Krykbaev, et al.
Inflammatory Bowel Diseases|August 9, 2020
Multi-"-Omics" Profiling in Patients With Quiescent Inflammatory Bowel Disease Identifies Biomarkers Predicting RelapseNienke Z Borren, Damian Plichta, Amit D Joshi, et al.
Cell|June 18, 2025
Bivalent chromatin instructs lineage specification during hematopoiesisMasaki Yagi, Gracia Bonilla, Michael S Hoetker, et al.
Cell Reports|May 6, 2014
Metabolic resource allocation in individual microbes determines ecosystem interactions and spatial dynamicsWilliam R Harcombe, William J Riehl, Ilija Dukovski, et al.
Cell|August 11, 2022
Epigenetic reader SP140 loss of function drives Crohn's disease due to uncontrolled macrophage topoisomerasesHajera Amatullah, Isabella Fraschilla, Sreehaas Digumarthi, et al.
Clinical Gastroenterology and Hepatology : the Official Clinical Practice Journal of the American Gastroenterological Association|March 19, 2020
Alterations in Fecal Microbiomes and Serum Metabolomes of Fatigued Patients With Quiescent Inflammatory Bowel DiseasesNienke Z Borren, Damian Plichta, Amit D Joshi, et al.
Biorxiv : the Preprint Server for Biology|September 26, 2025
YAP1 drives aggressive and therapy resistant state in melanoma through reprogramming the chromatin and regulating immune evasive programsNana Chen, Gracia Bonilla, Abdullah Ai Emran, et al.
Biorxiv : the Preprint Server for Biology|March 18, 2024
Leukemia aggressiveness is driven by chromatin remodeling and expression changes of core regulatorsGracia Bonilla, Alexander Morris, Sharmistha Kundu, et al.
Genes & Development|February 4, 2026
Multiomic analysis of clonal development reveals new regulators of leukemic cell growthGracia Bonilla, Alexander Morris, Sharmistha Kundu, et al.
Biorxiv : the Preprint Server for Biology|August 30, 2024
An aging-sensitive compensatory secretory phospholipase that confers neuroprotection and cognitive resilienceCinzia Vicidomini, Travis D Goode, Kathleen M McAvoy, et al.
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