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Bioinformatics (Oxford, England)|September 3, 2024
SWAMPy: simulating SARS-CoV-2 wastewater amplicon metagenomesWilliam Boulton, Fatma Rabia Fidan, Hubert Denise, et al.Molecular Biology and Evolution|May 23, 2019
Modeling Structural Constraints on Protein Evolution via Side-Chain Conformational StatesUmberto Perron, Alexey M Kozlov, Alexandros Stamatakis, et al.Scientific Reports|August 12, 2024
Diversity and specificity of molecular functions in cyanobacterial symbiontsEllen S Cameron, Santiago Sanchez, Nick Goldman, et al.Nucleic Acids Research|December 31, 2005
PANDIT: an evolution-centric database of protein and associated nucleotide domains with inferred treesSimon Whelan, Paul I W de Bakker, Emmanuel Quevillon, et al.Nature|November 5, 2025
Assessing phylogenetic confidence at pandemic scalesNicola De Maio, Nhan Ly-Trong, Samuel Martin, et al.Molecular Biology and Evolution|July 30, 2003
Protein evolution with dependence among codons due to tertiary structureDouglas M Robinson, David T Jones, Hirohisa Kishino, et al.Journal of Proteome Research|June 28, 2021
Genetic Variability of the SARS-CoV-2 PocketomeSetayesh Yazdani, Nicola De Maio, Yining Ding, et al.Plos Computational Biology|April 19, 2014
Phylogenetic quantification of intra-tumour heterogeneityRoland F Schwarz, Anne Trinh, Botond Sipos, et al.Systematic Biology|June 3, 2015
Current Methods for Automated Filtering of Multiple Sequence Alignments Frequently Worsen Single-Gene Phylogenetic InferenceGe Tan, Matthieu Muffato, Christian Ledergerber, et al.Nature Methods|November 29, 2016
A scored human protein-protein interaction network to catalyze genomic interpretationTaibo Li, Rasmus Wernersson, Rasmus B Hansen, et al.Pageof 10