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The Journal of Chemical Physics|October 5, 2013
Quantitative comparison of alternative methods for coarse-graining biological networksGregory R Bowman, Luming Meng, Xuhui HuangJournal of the American Chemical Society|September 12, 2013
Dynamics of an intrinsically disordered protein reveal metastable conformations that potentially seed aggregationQin Qiao, Gregory R Bowman, Xuhui HuangCell Research|April 28, 2010
Network models for molecular kinetics and their initial applications to human healthGregory R Bowman, Xuhui Huang, Vijay S PandeMethods (San Diego, Calif.)|May 5, 2009
Using generalized ensemble simulations and Markov state models to identify conformational statesGregory R Bowman, Xuhui Huang, Vijay S PandeThe Journal of Chemical Physics|June 3, 2008
Convergence of folding free energy landscapes via application of enhanced sampling methods in a distributed computing environmentXuhui Huang, Gregory R Bowman, Vijay S PandeProceedings of the National Academy of Sciences of the United States of America|October 7, 2009
Rapid equilibrium sampling initiated from nonequilibrium dataXuhui Huang, Gregory R Bowman, Sergio Bacallado, et al.Plos Computational Biology|June 4, 2011
A role for both conformational selection and induced fit in ligand binding by the LAO proteinDaniel-Adriano Silva, Gregory R Bowman, Alejandro Sosa-Peinado, et al.The Journal of Chemical Physics|August 3, 2017
Path lumping: An efficient algorithm to identify metastable path channels for conformational dynamics of multi-body systemsLuming Meng, Fu Kit Sheong, Xiangze Zeng, et al.Plos Computational Biology|August 8, 2014
Quantitatively characterizing the ligand binding mechanisms of choline binding protein using Markov state model analysisShuo Gu, Daniel-Adriano Silva, Luming Meng, et al.Journal of Chemical Theory and Computation|November 18, 2015
Automatic state partitioning for multibody systems (APM): an efficient algorithm for constructing Markov state models to elucidate conformational dynamics of multibody systemsFu Kit Sheong, Daniel-Adriano Silva, Luming Meng, et al.Pageof 38