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Biorxiv : the Preprint Server for Biology|August 1, 2026
Statistical Inconsistency of Error-correction Objectives for Perfect PhylogeniesGryte Satas, Matthew A Myers, Sohrab P Shah
Biorxiv : the Preprint Server for Biology|March 10, 2025
Inferring active mutational processes in cancer using single cell sequencing and evolutionary constraintsGryte Satas, Matthew A Myers, Andrew McPherson, et al.
Cell Systems|June 24, 2019
CALDER: Inferring Phylogenetic Trees from Longitudinal Tumor SamplesMatthew A Myers, Gryte Satas, Benjamin J Raphael
Biorxiv : the Preprint Server for Biology|January 30, 2023
Exploiting allele-specific transcriptional effects of subclonal copy number alterations for genotype-phenotype mapping in cancer cell populationsHongyu Shi, Marc J Williams, Gryte Satas, et al.
Nature Communications|March 21, 2024
Allele-specific transcriptional effects of subclonal copy number alterations enable genotype-phenotype mapping in cancer cellsHongyu Shi, Marc J Williams, Gryte Satas, et al.
Bioinformatics (Oxford, England)|June 29, 2018
Haplotype phasing in single-cell DNA-sequencing dataGryte Satas, Benjamin J Raphael
Bioinformatics (Oxford, England)|September 9, 2017
Tumor phylogeny inference using tree-constrained importance samplingGryte Satas, Benjamin J Raphael
Bioinformatics (Oxford, England)|October 10, 2014
Quantifying tumor heterogeneity in whole-genome and whole-exome sequencing dataLayla Oesper, Gryte Satas, Benjamin J Raphael
Nature Genetics|April 28, 2018
Inferring parsimonious migration histories for metastatic cancersMohammed El-Kebir, Gryte Satas, Benjamin J Raphael
Cell Systems|September 1, 2020
SCARLET: Single-cell tumor phylogeny inference with copy-number constrained mutation lossesGryte Satas, Simone Zaccaria, Geoffrey Mon, et al.
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