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Computational Biology and Chemistry|March 4, 2014
Deciphering histone code of transcriptional regulation in malaria parasites by large-scale data miningHaifen Chen, Stefano Lonardi, Jie Zheng
IEEE/ACM Transactions on Computational Biology and Bioinformatics|September 4, 2015
The Max-Min High-Order Dynamic Bayesian Network for Learning Gene Regulatory Networks with Time-Delayed RegulationsYifeng Li, Haifen Chen, Jie Zheng, et al.
BMC Medical Genomics|January 25, 2017
Rules of co-occurring mutations characterize the antigenic evolution of human influenza A/H3N2, A/H1N1 and B virusesHaifen Chen, Xinrui Zhou, Jie Zheng, et al.
IEEE/ACM Transactions on Computational Biology and Bioinformatics|September 13, 2018
Bayesian Data Fusion of Gene Expression and Histone Modification Profiles for Inference of Gene Regulatory NetworkHaifen Chen, D A K Maduranga, Piyushkumar A Mundra, et al.
BMC Systems Biology|December 19, 2014
Highly sensitive inference of time-delayed gene regulation by network deconvolutionHaifen Chen, Piyushkumar A Mundra, Li Na Zhao, et al.
Bioinformatics (Oxford, England)|November 23, 2014
Single-cell transcriptional analysis to uncover regulatory circuits driving cell fate decisions in early mouse developmentHaifen Chen, Jing Guo, Shital K Mishra, et al.
Proceedings of the National Academy of Sciences of the United States of America|February 23, 2021
Depletion of H3K36me2 recapitulates epigenomic and phenotypic changes induced by the H3.3K36M oncohistone mutationKartik N Rajagopalan, Xiao Chen, Daniel N Weinberg, et al.
BMC Genomics|November 7, 2014
Genome-wide analysis in Plasmodium falciparum reveals early and late phases of RNA polymerase II occupancy during the infectious cycleRagini Rai, Lei Zhu, Haifen Chen, et al.
Cell Reports|November 18, 2020
H3K27M in Gliomas Causes a One-Step Decrease in H3K27 Methylation and Reduced Spreading within the Constraints of H3K36 MethylationAshot S Harutyunyan, Haifen Chen, Tianyuan Lu, et al.
Genome Research|April 9, 2022
H3K36 dimethylation shapes the epigenetic interaction landscape by directing repressive chromatin modifications in embryonic stem cellsHaifen Chen, Bo Hu, Cynthia Horth, et al.
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