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Bioinformatics (Oxford, England)|February 4, 2006
Predicting interactions in protein networks by completing defective cliquesHaiyuan Yu, Alberto Paccanaro, Valery Trifonov, et al.Genome Biology|July 25, 2006
Design principles of molecular networks revealed by global comparisons and composite motifsHaiyuan Yu, Yu Xia, Valery Trifonov, et al.Plos Computational Biology|April 24, 2007
The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamicsHaiyuan Yu, Philip M Kim, Emmett Sprecher, et al.Genome Research|July 7, 2005
Assessing the limits of genomic data integration for predicting protein networksLong J Lu, Yu Xia, Alberto Paccanaro, et al.Nature Methods|March 20, 2012
Detecting overlapping protein complexes in protein-protein interaction networksTamás Nepusz, Haiyuan Yu, Alberto PaccanaroProceedings of the National Academy of Sciences of the United States of America|September 28, 2006
Genomic analysis of the hierarchical structure of regulatory networksHaiyuan Yu, Mark GersteinNature Communications|September 12, 2020
Predicting the frequencies of drug side effectsDiego Galeano, Shantao Li, Mark Gerstein, et al.BMC Bioinformatics|May 31, 2020
The corrected gene proximity map for analyzing the 3D genome organization using Hi-C dataCheng Ye, Alberto Paccanaro, Mark Gerstein, et al.Genome Research|August 11, 2006
Predicting essential genes in fungal genomesMichael Seringhaus, Alberto Paccanaro, Anthony Borneman, et al.Bioinformatics (Oxford, England)|June 2, 2007
Total ancestry measure: quantifying the similarity in tree-like classification, with genomic applicationsHaiyuan Yu, Ronald Jansen, Gustavo Stolovitzky, et al.Pageof 58