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Bioinformatics (Oxford, England)|December 1, 2020
FinaleDB: a browser and database of cell-free DNA fragmentation patternsHaizi Zheng, Michelle S Zhu, Yaping LiuGenome Medicine|December 9, 2022
CRAG: de novo characterization of cell-free DNA fragmentation hotspots in plasma whole-genome sequencingXionghui Zhou, Haizi Zheng, Hailu Fu, et al.Genome Biology|March 17, 2023
NOMe-HiC: joint profiling of genetic variant, DNA methylation, chromatin accessibility, and 3D genome in the same DNA moleculeHailu Fu, Haizi Zheng, Xiaoting Chen, et al.Proceedings of the National Academy of Sciences of the United States of America|September 5, 2019
Extracellular RNA in a single droplet of human serum reflects physiologic and disease statesZixu Zhou, Qiuyang Wu, Zhangming Yan, et al.Biorxiv : the Preprint Server for Biology|January 23, 2024
FinaleMe: Predicting DNA methylation by the fragmentation patterns of plasma cell-free DNAYaping Liu, Sarah C Reed, Christopher Lo, et al.Nature Communications|March 30, 2024
FinaleMe: Predicting DNA methylation by the fragmentation patterns of plasma cell-free DNAYaping Liu, Sarah C Reed, Christopher Lo, et al.Medrxiv : the Preprint Server for Health Sciences|April 10, 2026
Genome-Wide Variations of End Motif in Cell-Free DNA Fragments Distinguish Immunotherapy Responders from Non-Responders in Head and Neck Cancer: A Multi-Institute Prospective StudyRavi Bandaru, Hailu Fu, Haizi Zheng, et al.The Journal of Clinical Investigation|May 19, 2026
Genome-wide variation in cell-free DNA end motif entropy predicts immunotherapy response in head and neck cancerRavi Bandaru, Hailu Fu, Haizi Zheng, et al.Nature|November 30, 2022
Human fetal cerebellar cell atlas informs medulloblastoma origin and oncogenesisZaili Luo, Mingyang Xia, Wei Shi, et al.Pageof 1