Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Filters

Hamed Khakzad

Showing results (1-10 of 29) with videos related to

Pageof 3
Sort By:
Cell Systems|August 21, 2025
Shaping the uncharted: Revealing the protein structure space from the perspective of generative modelsLuiz Felipe Piochi, Hamed Khakzad
Journal of Visualized Experiments : Jove|November 8, 2021
Quaternary Structure Modeling Through Chemical Cross-Linking Mass Spectrometry: Extending TX-MS Jupyter ReportsHamed Khakzad, Swen Vermeul, Lars Malmström
BMC Bioinformatics|April 20, 2019
Greedy de novo motif discovery to construct motif repositories for bacterial proteomesHamed Khakzad, Johan Malmström, Lars Malmström
Bioinformatics (Oxford, England)|June 15, 2021
Cheetah-MS: a web server to model protein complexes using tandem cross-linking mass spectrometry dataHamed Khakzad, Lotta Happonen, Johan Malmström, et al.
Cell Systems|December 23, 2025
DynamicGT: A dynamic-aware geometric transformer model to predict protein-binding interfaces in flexible and disordered regionsOmid Mokhtari, Sergei Grudinin, Yasaman Karami, et al.
Nucleic Acids Research|November 13, 2025
DynaRepo: the repository of macromolecular conformational dynamicsOmid Mokhtari, Emmanuelle Bignon, Hamed Khakzad, et al.
Computers in Biology and Medicine|April 5, 2016
PDB2Graph: A toolbox for identifying critical amino acids map in proteins based on graph theoryNiloofar Niknam, Hamed Khakzad, Seyed Shahriar Arab, et al.
Medical Microbiology and Immunology|February 20, 2020
Structural proteomics, electron cryo-microscopy and structural modeling approaches in bacteria-human protein interactionsSounak Chowdhury, Lotta Happonen, Hamed Khakzad, et al.
Advanced Science (Weinheim, Baden-Wurttemberg, Germany)|March 12, 2026
Rapid Proteome-Wide Discovery of Protein-Protein Interactions With ppIRISLuiz Felipe Piochi, Di Tang, Johan Malmström, et al.
Protein Science : a Publication of the Protein Society|May 11, 2023
De novo protein design by inversion of the AlphaFold structure prediction networkCasper A Goverde, Benedict Wolf, Hamed Khakzad, et al.
Pageof 3

Showing results (1-10 of 29) with videos related to

Sort By:
Pageof 3
Cell Systems|August 21, 2025
Shaping the uncharted: Revealing the protein structure space from the perspective of generative modelsLuiz Felipe Piochi, Hamed Khakzad
Journal of Visualized Experiments : Jove|November 8, 2021
Quaternary Structure Modeling Through Chemical Cross-Linking Mass Spectrometry: Extending TX-MS Jupyter ReportsHamed Khakzad, Swen Vermeul, Lars Malmström
BMC Bioinformatics|April 20, 2019
Greedy de novo motif discovery to construct motif repositories for bacterial proteomesHamed Khakzad, Johan Malmström, Lars Malmström
Bioinformatics (Oxford, England)|June 15, 2021
Cheetah-MS: a web server to model protein complexes using tandem cross-linking mass spectrometry dataHamed Khakzad, Lotta Happonen, Johan Malmström, et al.
Cell Systems|December 23, 2025
DynamicGT: A dynamic-aware geometric transformer model to predict protein-binding interfaces in flexible and disordered regionsOmid Mokhtari, Sergei Grudinin, Yasaman Karami, et al.
Nucleic Acids Research|November 13, 2025
DynaRepo: the repository of macromolecular conformational dynamicsOmid Mokhtari, Emmanuelle Bignon, Hamed Khakzad, et al.
Computers in Biology and Medicine|April 5, 2016
PDB2Graph: A toolbox for identifying critical amino acids map in proteins based on graph theoryNiloofar Niknam, Hamed Khakzad, Seyed Shahriar Arab, et al.
Medical Microbiology and Immunology|February 20, 2020
Structural proteomics, electron cryo-microscopy and structural modeling approaches in bacteria-human protein interactionsSounak Chowdhury, Lotta Happonen, Hamed Khakzad, et al.
Advanced Science (Weinheim, Baden-Wurttemberg, Germany)|March 12, 2026
Rapid Proteome-Wide Discovery of Protein-Protein Interactions With ppIRISLuiz Felipe Piochi, Di Tang, Johan Malmström, et al.
Protein Science : a Publication of the Protein Society|May 11, 2023
De novo protein design by inversion of the AlphaFold structure prediction networkCasper A Goverde, Benedict Wolf, Hamed Khakzad, et al.
Pageof 3