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Genomics|October 19, 2021
DeepSE: Detecting super-enhancers among typical enhancers using only sequence feature embeddingsQiao-Ying Ji, Xiu-Jun Gong, Hao-Min Li, et al.Frontiers in Genetics|January 11, 2020
Predicting Endoplasmic Reticulum Resident Proteins Using Auto-Cross Covariance Transformation With a U-Shaped Residue Weight-Transfer FunctionYang-Yang Miao, Wei Zhao, Guang-Ping Li, et al.Protein and Peptide Letters|September 6, 2018
A Brief Review on Software Tools in Generating Chou's Pseudo-factor Representations for All Types of Biological SequencesWei Zhao, Likun Wang, Tian-Xiang Zhang, et al.Briefings in Bioinformatics|September 22, 2018
CPPred-FL: a sequence-based predictor for large-scale identification of cell-penetrating peptides by feature representation learningXiaoli Qiang, Chen Zhou, Xiucai Ye, et al.Frontiers in Genetics|April 14, 2022
XGEM: Predicting Essential miRNAs by the Ensembles of Various Sequence-Based Classifiers With XGBoost AlgorithmHui Min, Xiao-Hong Xin, Chu-Qiao Gao, et al.International Journal of Molecular Sciences|November 15, 2017
UltraPse: A Universal and Extensible Software Platform for Representing Biological SequencesPu-Feng Du, Wei Zhao, Yang-Yang Miao, et al.Frontiers in Pharmacology|January 31, 2022
DDA-SKF: Predicting Drug-Disease Associations Using Similarity Kernel FusionChu-Qiao Gao, Yuan-Ke Zhou, Xiao-Hong Xin, et al.Briefings in Bioinformatics|November 4, 2020
KNIndex: a comprehensive database of physicochemical properties for k-tuple nucleotidesWen-Ya Zhang, Junhai Xu, Jun Wang, et al.Journal of Theoretical Biology|May 4, 2019
Predicting protein sub-Golgi locations by combining functional domain enrichment scores with pseudo-amino acid compositionsWei Zhao, Guang-Ping Li, Jun Wang, et al.Frontiers in Genetics|April 7, 2022
SGII: Systematic Identification of Essential lncRNAs in Mouse and Human Genome With lncRNA-Protein-Protein Heterogeneous Interaction NetworkXiao-Hong Xin, Ying-Ying Zhang, Chu-Qiao Gao, et al.Pageof 209