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Genome Research|May 20, 2016
Basset: learning the regulatory code of the accessible genome with deep convolutional neural networksDavid R Kelley, Jasper Snoek, John L RinnBiorxiv : the Preprint Server for Biology|May 7, 2026
Sequence design for three-dimensional genome folding using Akita SemifreddoPaulina N Smaruj, David R Kelley, Geoffrey FudenbergGenome Biology|December 1, 2010
Quake: quality-aware detection and correction of sequencing errorsDavid R Kelley, Michael C Schatz, Steven L SalzbergNature Communications|August 25, 2021
The landscape of alternative polyadenylation in single cells of the developing mouse embryoVikram Agarwal, Sereno Lopez-Darwin, David R Kelley, et al.Plos Computational Biology|February 4, 2025
Interpreting the CTCF-mediated sequence grammar of genome folding with AkitaV2Paulina N Smaruj, Fahad Kamulegeya, David R Kelley, et al.Health Care Science|October 31, 2024
Toward real-world deployment of machine learning for health care: External validation, continual monitoring, and randomized clinical trialsHan YuanGenome Biology|January 10, 2015
Transposable elements modulate human RNA abundance and splicing via specific RNA-protein interactionsDavid R Kelley, David G Hendrickson, Danielle Tenen, et al.Genome Biology|February 18, 2016
Widespread RNA binding by chromatin-associated proteinsDavid G Hendrickson, David R Kelley, Danielle Tenen, et al.Cell Reports|April 28, 2021
Differentiation reveals latent features of aging and an energy barrier in murine myogenesisJacob C Kimmel, Nelda Yi, Margaret Roy, et al.Nucleic Acids Research|November 22, 2011
Gene prediction with Glimmer for metagenomic sequences augmented by classification and clusteringDavid R Kelley, Bo Liu, Arthur L Delcher, et al.Pageof 39