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Nature Communications|January 27, 2025
Integrating representation learning, permutation, and optimization to detect lineage-related gene expression patternsHannah M Schlüter, Caroline UhlerFoundations of Computational Mathematics (New York, N.Y.)|August 8, 2022
Causal Structure Learning: A Combinatorial PerspectiveChandler Squires, Caroline UhlerBioarchitecture|July 20, 2016
Geometric control and modeling of genome reprogrammingCaroline Uhler, G V ShivashankarTrends in Cancer|April 3, 2018
Nuclear Mechanopathology and Cancer DiagnosisCaroline Uhler, G V ShivashankarTrends in Cell Biology|July 22, 2017
Chromosome Intermingling: Mechanical Hotspots for Genome RegulationCaroline Uhler, G V ShivashankarNature Reviews. Molecular Cell Biology|October 19, 2017
Regulation of genome organization and gene expression by nuclear mechanotransductionCaroline Uhler, G V ShivashankarBioinformatics (Oxford, England)|March 11, 2021
DCI: learning causal differences between gene regulatory networksAnastasiya Belyaeva, Chandler Squires, Caroline UhlerPlos Computational Biology|February 2, 2026
Learning genetic perturbation effects with variational causal inferenceEmily Liu, Jiaqi Zhang, Caroline UhlerBiorxiv : the Preprint Server for Biology|June 12, 2025
Learning Genetic Perturbation Effects with Variational Causal InferenceEmily Liu, Jiaqi Zhang, Caroline UhlerProceedings of the National Academy of Sciences of the United States of America|October 17, 2020
Overparameterized neural networks implement associative memoryAdityanarayanan Radhakrishnan, Mikhail Belkin, Caroline UhlerPageof 6