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Nature Computational Science|August 8, 2022
Balancing efficient analysis and storage of quantitative genomics data with the D4 format and d4toolsHao Hou, Brent Pedersen, Aaron QuinlanNature Reviews. Genetics|August 15, 2017
Settling the score: variant prioritization and Mendelian diseaseKaren Eilbeck, Aaron Quinlan, Mark YandellGenome Research|June 9, 2006
Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genesBrian C Thomas, Brent Pedersen, Michael FreelingPlos Genetics|May 21, 2010
Transposed genes in Arabidopsis are often associated with flanking repeatsMargaret R Woodhouse, Brent Pedersen, Michael FreelingNucleic Acids Research|June 3, 2015
Cas9-chromatin binding information enables more accurate CRISPR off-target predictionRitambhara Singh, Cem Kuscu, Aaron Quinlan, et al.Frontiers in Plant Science|July 23, 2013
Automated conserved non-coding sequence (CNS) discovery reveals differences in gene content and promoter evolution among grassesGina Turco, James C Schnable, Brent Pedersen, et al.Bioinformatics (Oxford, England)|July 5, 2011
MethylCoder: software pipeline for bisulfite-treated sequencesBrent Pedersen, Tzung-Fu Hsieh, Christian Ibarra, et al.The Plant Cell|May 15, 2007
G-boxes, bigfoot genes, and environmental response: characterization of intragenomic conserved noncoding sequences in ArabidopsisMichael Freeling, Lakshmi Rapaka, Eric Lyons, et al.Proceedings of the National Academy of Sciences of the United States of America|February 16, 2007
Arabidopsis intragenomic conserved noncoding sequenceBrian C Thomas, Lakshmi Rapaka, Eric Lyons, et al.Current Opinion in Immunology|December 3, 2014
Genetics of systemic lupus erythematosus: immune responses and end organ resistance to damageChao Dai, Yun Deng, Aaron Quinlan, et al.Pageof 13