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Journal of Chemical Information and Modeling|January 29, 2019
Calculating Single-Channel Permeability and Conductance from Transition PathsXiaoyan Zhou, Fangqiang ZhuJournal of Chemical Theory and Computation|March 30, 2017
Thermodynamics of Protein Folding Studied by Umbrella Sampling along a Reaction Coordinate of Native ContactsHamed Meshkin, Fangqiang ZhuBiophysical Journal|August 3, 2012
Drying transition in the hydrophobic gate of the GLIC channel blocks ion conductionFangqiang Zhu, Gerhard HummerJournal of Chemical Theory and Computation|February 16, 2013
Theory and simulation of ion conduction in the pentameric GLIC channelFangqiang Zhu, Gerhard HummerJournal of Chemical Theory and Computation|September 15, 2021
Toward Convergence in Free Energy Calculations for Protein Conformational Changes: A Case Study on the Thin Gate of Mhp1 TransporterHamed Meshkin, Fangqiang ZhuPlos One|July 18, 2015
Conformational Changes in Two Inter-Helical Loops of Mhp1 Membrane TransporterHyun Deok Song, Fangqiang ZhuJournal of Chemical Information and Modeling|June 6, 2007
Recursive distance partitioning algorithm for common pharmacophore identificationFangqiang Zhu, Dimitris K AgrafiotisThe Journal of Physical Chemistry. B|December 14, 2016
Finite Temperature String Method with Umbrella Sampling: Application on a Side Chain Flipping in Mhp1 TransporterHyun Deok Song, Fangqiang ZhuPlos One|July 18, 2013
Conformational dynamics of a ligand-free adenylate kinaseHyun Deok Song, Fangqiang ZhuJournal of Computational Chemistry|February 15, 2007
Self-organizing superimposition algorithm for conformational samplingFangqiang Zhu, Dimitris K AgrafiotisPageof 13