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Bioinformatics (Oxford, England)|May 30, 2023
NHGNN-DTA: a node-adaptive hybrid graph neural network for interpretable drug-target binding affinity predictionHaohuai He, Guanxing Chen, Calvin Yu-Chian ChenBriefings in Bioinformatics|May 5, 2022
3DGT-DDI: 3D graph and text based neural network for drug-drug interaction predictionHaohuai He, Guanxing Chen, Calvin Yu-Chian ChenNPJ Digital Medicine|January 28, 2025
Dual modality feature fused neural network integrating binding site information for drug target affinity predictionHaohuai He, Guanxing Chen, Zhenchao Tang, et al.Journal of Chemical Theory and Computation|September 13, 2024
MMFA-DTA: Multimodal Feature Attention Fusion Network for Drug-Target Affinity Prediction for Drug Repurposing Against SARS-CoV-2Guanxing Chen, Haohuai He, Qiujie Lv, et al.Neural Networks : the Official Journal of the International Neural Network Society|June 5, 2023
3D graph neural network with few-shot learning for predicting drug-drug interactions in scaffold-based cold start scenarioQiujie Lv, Jun Zhou, Ziduo Yang, et al.Communications Biology|November 5, 2024
Knowledge-based inductive bias and domain adaptation for cell type annotationZhenchao Tang, Guanxing Chen, Shouzhi Chen, et al.Chemical Science|October 13, 2023
TCMBank: bridges between the largest herbal medicines, chemical ingredients, target proteins, and associated diseases with intelligence text miningQiujie Lv, Guanxing Chen, Haohuai He, et al.Nature Communications|August 10, 2024
De novo generation of SARS-CoV-2 antibody CDRH3 with a pre-trained generative large language modelHaohuai He, Bing He, Lei Guan, et al.Science Advances|August 9, 2023
DeepAIR: A deep learning framework for effective integration of sequence and 3D structure to enable adaptive immune receptor analysisYu Zhao, Bing He, Fan Xu, et al.Genome Biology|September 24, 2025
scKAN: interpretable single-cell analysis for cell-type-specific gene discovery and drug repurposing via Kolmogorov-Arnold networksHaohuai He, Zhenchao Tang, Guanxing Chen, et al.Pageof 1