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Journal of Chemical Information and Modeling|August 16, 2017
Maximum Likelihood Calibration of the UNRES Force Field for Simulation of Protein Structure and DynamicsPaweł Krupa, Anna Hałabis, Wioletta Żmudzińska, et al.Proteins|November 1, 2007
Identification of GATC- and CCGG-recognizing Type II REases and their putative specificity-determining positions using Scan2S--a novel motif scan algorithm with optional secondary structure constraintsMasha Y Niv, Lucy Skrabanek, Richard J Roberts, et al.The Journal of Physical Chemistry. B|August 24, 2007
Potential of mean force of hydrophobic association: dependence on solute sizeEmil Sobolewski, Mariusz Makowski, Cezary Czaplewski, et al.The Journal of Physical Chemistry. B|August 15, 2008
Simple physics-based analytical formulas for the potentials of mean force for the interaction of amino acid side chains in water. IV. Pairs of different hydrophobic side chainsMariusz Makowski, Emil Sobolewski, Cezary Czaplewski, et al.The Journal of Chemical Physics|January 21, 2014
Kinks, loops, and protein folding, with protein A as an exampleAndrey Krokhotin, Adam Liwo, Gia G Maisuradze, et al.Proceedings of the National Academy of Sciences of the United States of America|February 5, 2013
A generalized G-SFED continuum solvation free energy calculation modelSehan Lee, Kwang-Hwi Cho, Young-Mook Kang, et al.Journal of Chemical Theory and Computation|March 23, 2010
Implementation of molecular dynamics and its extensions with the coarse-grained UNRES force field on massively parallel systems; towards millisecond-scale simulations of protein structure, dynamics, and thermodynamicsAdam Liwo, Stanisław Ołdziej, Cezary Czaplewski, et al.Journal of Computational Chemistry|October 12, 2018
A new protein nucleic-acid coarse-grained force field based on the UNRES and NARES-2P force fieldsAdam K Sieradzan, Artur Giełdoń, Yanping Yin, et al.Biophysical Journal|January 30, 2004
Polyproline II helix conformation in a proline-rich environment: a theoretical studyJorge A Vila, Héctor A Baldoni, Daniel R Ripoll, et al.Biopolymers|January 1, 1996
Computational study of packing a collagen-like molecule: quasi-hexagonal vs "Smith" collagen microfibril modelJ Lee, H A Scheraga, S RackovskyPageof 26