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The Journal of Physical Chemistry Letters|October 12, 2013
Single-Molecule Analysis of Cytochrome c Folding by Monitoring the Lifetime of an Attached Fluorescent ProbeAndrea J Lee, Wesley B Asher, Harry A Stern, et al.
RNA (New York, N.Y.)|September 16, 2015
Molecular mechanism for preQ1-II riboswitch function revealed by molecular dynamicsAsaminew H Aytenfisu, Joseph A Liberman, Joseph E Wedekind, et al.
Proceedings of the National Academy of Sciences of the United States of America|December 26, 2008
Accurate SHAPE-directed RNA structure determinationKatherine E Deigan, Tian W Li, David H Mathews, et al.
Journal of the American Chemical Society|July 11, 2008
NMR-assisted prediction of RNA secondary structure: identification of a probable pseudoknot in the coding region of an R2 retrotransposonJames M Hart, Scott D Kennedy, David H Mathews, et al.
Journal of Molecular Biology|March 30, 2025
Structural Impact of 3-methylcytosine Modification on the Anticodon Stem-loop of a Neuronally-enriched Arginine tRNAKyle D Berger, Anees M K Puthenpeedikakkal, David H Mathews, et al.
Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|January 30, 2026
Theory, Algorithms, and Applications for Identification of Undesignable RNA Secondary Structures and MotifsTianshuo Zhou, Apoorv Malik, Wei Yu Tang, et al.
Arxiv|December 23, 2024
Sampling-based Continuous Optimization with Coupled Variables for RNA DesignWei Yu Tang, Ning Dai, Tianshuo Zhou, et al.
Journal of Molecular Biology|March 27, 2026
Motif Server: Web Server for Undesignable RNA Motifs and StructuresApoorv Malik, Tianshuo Zhou, Wei Yu Tang, et al.
Journal of Chemical Theory and Computation|January 18, 2012
Revision of AMBER Torsional Parameters for RNA Improves Free Energy Predictions for Tetramer Duplexes with GC and iGiC Base PairsIlyas Yildirim, Scott D Kennedy, Harry A Stern, et al.
Biorxiv : the Preprint Server for Biology|November 28, 2024
Structural impact of 3-methylcytosine modification on the anticodon stem of a neuronally-enriched arginine tRNAKyle D Berger, Anees M K Puthenpeedikakkal, David H Mathews, et al.
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