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RNA (New York, N.Y.)|October 14, 2010
Computational approaches for RNA energy parameter estimationMirela Andronescu, Anne Condon, Holger H Hoos, et al.Plos One|June 16, 2015
Discovery of Novel ncRNA Sequences in Multiple Genome Alignments on the Basis of Conserved and Stable Secondary StructuresYinghan Fu, Zhenjiang Zech Xu, Zhi J Lu, et al.Journal of Chemical Theory and Computation|May 8, 2014
Modified Amber Force Field Correctly Models the Conformational Preference for Tandem GA pairs in RNAAsaminew H Aytenfisu, Aleksandar Spasic, Matthew G Seetin, et al.Biorxiv : the Preprint Server for Biology|January 13, 2025
40S ribosomal subunits scan mRNA for the start codon by one-dimensional diffusionHironao Wakabayashi, Mingyi Zhu, Elizabeth J Grayhack, et al.RNA (New York, N.Y.)|July 31, 2025
40S ribosomal subunits scan mRNA for the start codon by one-dimensional diffusionHironao Wakabayashi, Mingyi Zhu, Elizabeth J Grayhack, et al.Bioinformatics (Oxford, England)|July 25, 2007
Efficient parameter estimation for RNA secondary structure predictionMirela Andronescu, Anne Condon, Holger H Hoos, et al.RNA (New York, N.Y.)|August 15, 2018
Analysis of RNA nearest neighbor parameters reveals interdependencies and quantifies the uncertainty in RNA secondary structure predictionJeffrey Zuber, B Joseph Cabral, Iain McFadyen, et al.Journal of Chemical Theory and Computation|November 26, 2011
Molecular Mechanics Investigation of an Adenine-Adenine Non-Canonical Pair Conformational ChangeKeith P Van Nostrand, Scott D Kennedy, Douglas H Turner, et al.Methods in Molecular Biology (Clifton, N.J.)|January 27, 2023
Linear-Time Algorithms for RNA Structure PredictionHe Zhang, Liang Zhang, Kaibo Liu, et al.Bioinformatics (Oxford, England)|June 30, 2023
RNA design via structure-aware multifrontier ensemble optimizationTianshuo Zhou, Ning Dai, Sizhen Li, et al.Pageof 20