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The Journal of Biological Chemistry|May 11, 2011
Biophysical analysis of influenza A virus RNA promoter at physiological temperaturesErin Noble, David H Mathews, Jonathan L Chen, et al.Biorxiv : the Preprint Server for Biology|June 4, 2026
Reparameterization of the Amber RNA Force Field Non-Bonded TermsAnees Mohammed Keedakkatt Puthenpeedikakkal, Chapin E Cavender, Louis G Smith, et al.Journal of Molecular Biology|November 11, 2022
Intrinsically Unstructured Sequences in the mRNA 3' UTR Reduce the Ability of Poly(A) Tail to Enhance TranslationWan-Jung C Lai, Mingyi Zhu, Margarita Belinite, et al.Proceedings of the National Academy of Sciences of the United States of America|March 19, 2013
Accurate SHAPE-directed RNA secondary structure modeling, including pseudoknotsChristine E Hajdin, Stanislav Bellaousov, Wayne Huggins, et al.Bioinformatics (Oxford, England)|September 13, 2019
LinearFold: linear-time approximate RNA folding by 5'-to-3' dynamic programming and beam searchLiang Huang, He Zhang, Dezhong Deng, et al.Biochemistry|October 13, 2007
NMR reveals the absence of hydrogen bonding in adjacent UU and AG mismatches in an isolated internal loop from ribosomal RNANeelaabh Shankar, Tianbing Xia, Scott D Kennedy, et al.Nature Communications|March 12, 2022
Secondary structure prediction for RNA sequences including N6-methyladenosineElzbieta Kierzek, Xiaoju Zhang, Richard M Watson, et al.Arxiv|July 7, 2022
LinearAlifold: Linear-Time Consensus Structure Prediction for RNA AlignmentsApoorv Malik, Liang Zhang, Milan Gautam, et al.Journal of Molecular Biology|July 6, 2024
LinearAlifold: Linear-time consensus structure prediction for RNA alignmentsApoorv Malik, Liang Zhang, Milan Gautam, et al.Proceedings of the National Academy of Sciences of the United States of America|May 5, 2004
Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structureDavid H Mathews, Matthew D Disney, Jessica L Childs, et al.Pageof 20