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RNA (New York, N.Y.)|February 14, 2018
Molecular dynamics correctly models the unusual major conformation of the GAGU RNA internal loop and with NMR reveals an unusual minor conformationAleksandar Spasic, Scott D Kennedy, Laura Needham, et al.Nucleic Acids Research|May 3, 2018
Improving RNA nearest neighbor parameters for helices by going beyond the two-state modelAleksandar Spasic, Kyle D Berger, Jonathan L Chen, et al.Cell Reports|December 22, 2021
Gene network modeling via TopNet reveals functional dependencies between diverse tumor-critical mediator genesHelene R McMurray, Aslihan Ambeskovic, Laurel A Newman, et al.Nature Communications|January 12, 2022
A small RNA that cooperatively senses two stacked metabolites in one pocket for gene controlGriffin M Schroeder, Chapin E Cavender, Maya E Blau, et al.Journal of Chemical Theory and Computation|October 31, 2018
Chemically Accurate Relative Folding Stability of RNA Hairpins from Molecular SimulationsLouis G Smith, Zhen Tan, Aleksandar Spasic, et al.Viruses|April 27, 2017
Structure-Function Model for Kissing Loop Interactions That Initiate Dimerization of Ty1 RNAEric R Gamache, Jung H Doh, Justin Ritz, et al.Journal of Computational Chemistry|October 24, 2002
Development of a polarizable force field for proteins via ab initio quantum chemistry: first generation model and gas phase testsGeorge A Kaminski, Harry A Stern, B J Berne, et al.Proceedings of the National Academy of Sciences of the United States of America|December 19, 2009
NMR analysis of G-protein betagamma subunit complexes reveals a dynamic G(alpha)-Gbetagamma subunit interface and multiple protein recognition modesAlan V Smrcka, Nessim Kichik, Teresa Tarragó, et al.Journal of Molecular Biology|October 27, 2009
Factors that determine the efficiency of HIV-1 strand transfer initiated at a specific siteSean T Rigby, Keith P Van Nostrand, April E Rose, et al.International Journal of Molecular Sciences|March 10, 2022
Secondary Structure of Influenza A Virus Genomic Segment 8 RNA Folded in a Cellular EnvironmentBarbara Szutkowska, Klaudia Wieczorek, Ryszard Kierzek, et al.Pageof 20