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Journal of Chemical Theory and Computation|November 1, 2012
The Amber ff99 Force Field Predicts Relative Free Energy Changes for RNA Helix FormationAleksandar Spasic, John Serafini, David H MathewsBioinformatics (Oxford, England)|July 7, 2026
Probabilistic RNA designability via interpretable ensemble approximation and dynamic decompositionTianshuo Zhou, David H Mathews, Liang HuangBMC Bioinformatics|April 21, 2007
Efficient pairwise RNA structure prediction using probabilistic alignment constraints in DynalignArif Ozgun Harmanci, Gaurav Sharma, David H MathewsCurrent Protocols in Nucleic Acid Chemistry|April 23, 2008
RNA secondary structure predictionDavid H Mathews, Douglas H Turner, Michael ZukerBiochemistry|August 9, 2006
Interpreting oligonucleotide microarray data to determine RNA secondary structure: application to the 3' end of Bombyx mori R2 RNAShenghua Duan, David H Mathews, Douglas H TurnerBMC Bioinformatics|April 22, 2011
TurboFold: iterative probabilistic estimation of secondary structures for multiple RNA sequencesArif O Harmanci, Gaurav Sharma, David H MathewsF1000 Biology Reports|May 25, 2010
RNA pseudoknots: folding and findingBiao Liu, David H Mathews, Douglas H TurnerNucleic Acids Research|February 29, 2008
PARTS: probabilistic alignment for RNA joinT secondary structure predictionArif Ozgun Harmanci, Gaurav Sharma, David H MathewsCurrent Protocols|November 14, 2024
Using the RNAstructure Software Package to Predict Conserved RNA StructuresAbhinav Mittal, Sara E Ali, David H MathewsJournal of Molecular Biology|March 24, 2024
NNDB: An Expanded Database of Nearest Neighbor Parameters for Predicting Stability of Nucleic Acid Secondary StructuresAbhinav Mittal, Douglas H Turner, David H MathewsPageof 20