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Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|January 20, 2022
GRNUlar: A Deep Learning Framework for Recovering Single-Cell Gene Regulatory NetworksHarsh Shrivastava, Xiuwei Zhang, Le Song, et al.Bioinformatics (Oxford, England)|December 10, 2021
EnGRaiN: a supervised ensemble learning method for recovery of large-scale gene regulatory networksManeesha Aluru, Harsh Shrivastava, Sriram P Chockalingam, et al.Bioinformatics (Oxford, England)|June 1, 2026
CeSpGRN: Inferring cell-specific gene regulatory networks from single cell multi-omics and spatial dataZiqi Zhang, Jongseok Han, Le Song, et al.Journal of Bioinformatics and Computational Biology|July 5, 2006
Efficient algorithms and software for detection of full-length LTR retrotransposonsAnantharaman Kalyanaraman, Srinivas AluruIEEE/ACM Transactions on Computational Biology and Bioinformatics|February 18, 2016
Discovering Motifs in Biological Sequences Using the Micron Automata ProcessorIndranil Roy, Srinivas AluruProceedings. IEEE Computational Systems Bioinformatics Conference|February 2, 2006
Efficient algorithms and software for detection of full-length LTR retrotransposonsAnantharaman Kalyanaraman, Srinivas AluruJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|March 7, 2025
Disambiguating a Soft Metagenomic ClusteringRahul Nihalani, Jaroslaw Zola, Srinivas AluruJournal of Bioinformatics and Computational Biology|February 23, 2013
Large-scale metagenomic sequence clustering on map-reduce clustersXiao Yang, Jaroslaw Zola, Srinivas AluruBioinformatics (Oxford, England)|July 12, 2021
A variant selection framework for genome graphsChirag Jain, Neda Tavakoli, Srinivas AluruPageof 40