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Microarrays (Basel, Switzerland)|September 23, 2016
Microarray Data Processing Techniques for Genome-Scale Network Inference from Large Public RepositoriesSriram Chockalingam, Maneesha Aluru, Srinivas AluruBMC Genomics|December 22, 2020
A comprehensive evaluation of long read error correction methodsHaowen Zhang, Chirag Jain, Srinivas AluruIEEE/ACM Transactions on Computational Biology and Bioinformatics|August 4, 2018
Fast de Bruijn Graph Compaction in Distributed Memory EnvironmentsTony Pan, Rahul Nihalani, Srinivas AluruIEEE/ACM Transactions on Computational Biology and Bioinformatics|October 10, 2015
Parallel Mutual Information Based Construction of Genome-Scale Networks on the Intel® Xeon Phi™ CoprocessorSanchit Misra, Kiran Pamnany, Srinivas AluruJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|July 11, 2024
GraphSlimmer: Preserving Read Mappability with the Minimum Number of VariantsNeda Tavakoli, Daniel Gibney, Srinivas AluruBioinformatics (Oxford, England)|September 14, 2010
Reptile: representative tiling for short read error correctionXiao Yang, Karin S Dorman, Srinivas AluruJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|November 30, 2022
On the Hardness of Sequence Alignment on De Bruijn GraphsDaniel Gibney, Sharma V Thankachan, Srinivas AluruBioinformatics (Oxford, England)|February 22, 2025
SCEMENT: scalable and memory efficient integration of large-scale single-cell RNA-sequencing dataSriram P Chockalingam, Maneesha Aluru, Srinivas AluruJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|April 9, 2016
A Provably Efficient Algorithm for the k-Mismatch Average Common Substring ProblemSharma V Thankachan, Alberto Apostolico, Srinivas AluruBMC Bioinformatics|February 24, 2011
Repeat-aware modeling and correction of short read errorsXiao Yang, Srinivas Aluru, Karin S DormanPageof 40