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Arxiv
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July 30, 2025
User-Guided Force-Directed Graph Layout
Hasan Balci, Augustin Luna
IEEE Transactions on Visualization and Computer Graphics
|
July 7, 2021
fCoSE: A Fast Compound Graph Layout Algorithm with Constraint Support
Hasan Balci, Ugur Dogrusoz
BMC Genomics
|
December 26, 2025
SyBValS: a validation and error resolution service for biological pathway maps
Yusuf Ziya Ozgul, Ugur Dogrusoz, Hasan Balci
Plos Computational Biology
|
November 14, 2022
SyBLaRS: A web service for laying out, rendering and mining biological maps in SBGN, SBML and more
Hasan Balci, Ugur Dogrusoz, Yusuf Ziya Ozgul, et al.
Plos One
|
May 30, 2018
Efficient methods and readily customizable libraries for managing complexity of large networks
Ugur Dogrusoz, Alper Karacelik, Ilkin Safarli, et al.
Bioinformatics (Oxford, England)
|
October 3, 2020
Newt: a comprehensive web-based tool for viewing, constructing and analyzing biological maps
Hasan Balci, Metin Can Siper, Nasim Saleh, et al.
Journal of Integrative Bioinformatics
|
January 22, 2026
Systems biology graphical notation: process description language level 1 version 2.1
Hasan Balci, Adrien Rougny, Rupert Overall, et al.
NPJ Systems Biology and Applications
|
November 30, 2024
Immune digital twins for complex human pathologies: applications, limitations, and challenges
Anna Niarakis, Reinhard Laubenbacher, Gary An, et al.
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Search research articles
Search
Showing results (1-10 of 8) with videos related to
Sort By:
Page
of 1
Arxiv
|
July 30, 2025
User-Guided Force-Directed Graph Layout
Hasan Balci, Augustin Luna
IEEE Transactions on Visualization and Computer Graphics
|
July 7, 2021
fCoSE: A Fast Compound Graph Layout Algorithm with Constraint Support
Hasan Balci, Ugur Dogrusoz
BMC Genomics
|
December 26, 2025
SyBValS: a validation and error resolution service for biological pathway maps
Yusuf Ziya Ozgul, Ugur Dogrusoz, Hasan Balci
Plos Computational Biology
|
November 14, 2022
SyBLaRS: A web service for laying out, rendering and mining biological maps in SBGN, SBML and more
Hasan Balci, Ugur Dogrusoz, Yusuf Ziya Ozgul, et al.
Plos One
|
May 30, 2018
Efficient methods and readily customizable libraries for managing complexity of large networks
Ugur Dogrusoz, Alper Karacelik, Ilkin Safarli, et al.
Bioinformatics (Oxford, England)
|
October 3, 2020
Newt: a comprehensive web-based tool for viewing, constructing and analyzing biological maps
Hasan Balci, Metin Can Siper, Nasim Saleh, et al.
Journal of Integrative Bioinformatics
|
January 22, 2026
Systems biology graphical notation: process description language level 1 version 2.1
Hasan Balci, Adrien Rougny, Rupert Overall, et al.
NPJ Systems Biology and Applications
|
November 30, 2024
Immune digital twins for complex human pathologies: applications, limitations, and challenges
Anna Niarakis, Reinhard Laubenbacher, Gary An, et al.
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of 1