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Chaos (Woodbury, N.Y.)|January 5, 2011
Modeling the complex dynamics of enzyme-pathway coevolutionMoritz Schütte, Alexander Skupin, Daniel Segrè, et al.Bioinformatics (Oxford, England)|October 22, 2011
A system-level approach for deciphering the transcriptional response to prion infectionMattia Zampieri, Giuseppe Legname, Daniel Segrè, et al.Biorxiv : the Preprint Server for Biology|December 19, 2025
hypeR-GEM: connecting metabolite signatures to enzyme-coding genes via genome-scale metabolic modelsZiwei Huang, Paola Sebastiani, Daniel Segrè, et al.Nature Ecology & Evolution|July 2, 2024
Metabolic complexity drives divergence in microbial communitiesMichael R Silverstein, Jennifer M Bhatnagar, Daniel SegrèGenome Informatics. International Conference on Genome Informatics|March 19, 2010
Co-evolution of metabolism and protein sequencesMoritz Schütte, Niels Klitgord, Daniel Segrè, et al.Elife|June 14, 2019
Metabolic network percolation quantifies biosynthetic capabilities across the human oral microbiomeDavid B Bernstein, Floyd E Dewhirst, Daniel SegrèGenome Biology|February 19, 2021
Addressing uncertainty in genome-scale metabolic model reconstruction and analysisDavid B Bernstein, Snorre Sulheim, Eivind Almaas, et al.Nature Genetics|December 14, 2004
Modular epistasis in yeast metabolismDaniel Segrè, Alexander Deluna, George M Church, et al.Journal of Bacteriology|October 22, 2008
Metabolic network model of a human oral pathogenVarun Mazumdar, Evan S Snitkin, Salomon Amar, et al.Physical Biology|July 28, 2022
Growth instabilities shape morphology and genetic diversity of microbial coloniesAlexander Golden, Ilija Dukovski, Daniel Segrè, et al.Pageof 16