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BMC Bioinformatics|July 9, 2024
ProcaryaSV: structural variation detection pipeline for bacterial genomes using short-read sequencingRobin Jugas, Helena Vitkova
Frontiers in Microbiology|March 6, 2026
Basecalling-free resistance gene identification using a hybrid transformer in raw nanopore signalsRoman Jakubicek, Jevhenij Vorochta, Marketa Jakubickova, et al.
Computational and Structural Biotechnology Journal|January 16, 2026
MethylomeMiner: A novel tool for high-resolution analysis of bacterial methylation patterns from nanopore sequencingMarketa Jakubickova, Katerina Sabatova, Michaela Zbudilova, et al.
Frontiers in Microbiology|February 18, 2026
Emergence and genomic characterization of hypervirulent ST23/K1 <i>Klebsiella pneumoniae</i>: local epidemiology and global contextMatej Bezdicek, Marketa Jakubickova, Viktoria Bitusikova, et al.
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