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Iscience|September 5, 2022
The role of antigen expression in shaping the repertoire of HLA presented ligandsHeli M Garcia Alvarez, Zeynep Koşaloğlu-Yalçın, Bjoern Peters, et al.Frontiers in Immunology|September 9, 2020
Unbiased Characterization of Peptide-HLA Class II Interactions Based on Large-Scale Peptide Microarrays; Assessment of the Impact on HLA Class II Ligand and Epitope PredictionMareike Wendorff, Heli M Garcia Alvarez, Thomas Østerbye, et al.Biorxiv : the Preprint Server for Biology|January 16, 2026
NetMHCIIphosPan: a machine learning tool for predicting HLA class II antigen presentation of phosphorylated peptidesHeli M Garcia Alvarez, Saghar Kaabinejadian, Hooman Yari, et al.Journal of Proteome Research|April 17, 2026
NetMHCIIphosPan: A Machine Learning Tool for Predicting HLA Class II Antigen Presentation of Phosphorylated PeptidesHeli M Garcia Alvarez, Saghar Kaabinejadian, Hooman Yari, et al.Methods in Molecular Biology (Clifton, N.J.)|June 18, 2024
In Silico Tools for Predicting Novel EpitopesCarolina Barra, Jonas Birkelund Nilsson, Astrid Saksager, et al.Frontiers in Immunology|April 18, 2024
IMPROVE: a feature model to predict neoepitope immunogenicity through broad-scale validation of T-cell recognitionAnnie Borch, Ibel Carri, Birkir Reynisson, et al.Pageof 1