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Genome Biology|May 20, 2017
A comparative evaluation of genome assembly reconciliation toolsHind Alhakami, Hamid Mirebrahim, Stefano LonardiBioinformatics (Oxford, England)|June 15, 2015
De novo meta-assembly of ultra-deep sequencing dataHamid Mirebrahim, Timothy J Close, Stefano LonardiBioinformatics (Oxford, England)|May 22, 2015
When less is more: 'slicing' sequencing data improves read decoding accuracy and de novo assembly qualityStefano Lonardi, Hamid Mirebrahim, Steve Wanamaker, et al.Bioinformatics (Oxford, England)|August 20, 2016
Higher classification sensitivity of short metagenomic reads with CLARK-SRachid Ounit, Stefano LonardiNucleic Acids Research|April 23, 2025
MSTmap Online: enhanced usability, visualization, and accessibilityAmirsadra Mohseni, Stefano LonardiDrug Discovery Today|December 27, 2005
Storage and transmission of microarray imagesYu Luo, Stefano LonardiBMC Bioinformatics|October 17, 2021
Reference-agnostic representation and visualization of pan-genomesQihua Liang, Stefano LonardiBriefings in Bioinformatics|March 13, 2025
Predicting differentially methylated cytosines in TET and DNMT3 knockout mutants via a large language modelSaleh Sereshki, Stefano LonardiProceedings. IEEE Computational Systems Bioinformatics Conference|February 2, 2006
Gridding and compression of microarray imagesStefano Lonardi, Yu LuoInternational Journal of Data Mining and Bioinformatics|April 11, 2008
A parallel edge-betweenness clustering tool for Protein-Protein Interaction networksQiaofeng Yang, Stefano LonardiPageof 10