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NAR Genomics and Bioinformatics|April 2, 2021
Jonckheere-Terpstra-Kendall-based non-parametric analysis of temporal differential gene expressionHitoshi Iuchi, Michiaki HamadaNucleic Acids Research|July 16, 2026
The Lomb-Scargle periodogram-based differentially expressed gene detection along pseudotimeHitoshi Iuchi, Michiaki HamadaComputational and Structural Biotechnology Journal|June 18, 2021
Representation learning applications in biological sequence analysisHitoshi Iuchi, Taro Matsutani, Keisuke Yamada, et al.Computational and Structural Biotechnology Journal|March 6, 2023
Bioinformatics approaches for unveiling virus-host interactionsHitoshi Iuchi, Junna Kawasaki, Kento Kubo, et al.Briefings in Bioinformatics|June 28, 2013
Fighting against uncertainty: an essential issue in bioinformaticsMichiaki HamadaJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|December 6, 2012
Direct updating of an RNA base-pairing probability matrix with marginal probability constraintsMichiaki HamadaMethods in Molecular Biology (Clifton, N.J.)|January 12, 2015
RNA secondary structure prediction from multi-aligned sequencesMichiaki HamadaBMC Bioinformatics|March 16, 2020
MoAIMS: efficient software for detection of enriched regions of MeRIP-SeqYiqian Zhang, Michiaki HamadaBriefings in Functional Genomics|January 29, 2019
Computational approaches for alternative and transient secondary structures of ribonucleic acidsTsukasa Fukunaga, Michiaki HamadaPageof 13