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Genome Biology|November 18, 2025
DeepCOI: a large language model-driven framework for fast and accurate taxonomic assignment in animal metabarcodingHo-Jin Gwak, Mina RhoFrontiers in Microbiology|December 2, 2020
Data-Driven Modeling for Species-Level Taxonomic Assignment From 16S rRNA: Application to Human MicrobiomesHo-Jin Gwak, Mina RhoBriefings in Bioinformatics|June 6, 2022
ViBE: a hierarchical BERT model to identify eukaryotic viruses using metagenome sequencing dataHo-Jin Gwak, Mina RhoJournal of Microbiology (Seoul, Korea)|February 10, 2021
Application of computational approaches to analyze metagenomic dataHo-Jin Gwak, Seung Jae Lee, Mina RhoPlos One|January 25, 2020
Functional dynamics of bacterial species in the mouse gut microbiome revealed by metagenomic and metatranscriptomic analysesYoun Wook Chung, Ho-Jin Gwak, Sungmin Moon, et al.BMC Bioinformatics|January 19, 2021
MegaR: an interactive R package for rapid sample classification and phenotype prediction using metagenome profiles and machine learningEliza Dhungel, Yassin Mreyoud, Ho-Jin Gwak, et al.The Laryngoscope|August 14, 2023
Antibiotic Sensitivity and Nasal Microbiome in Patients with Acute Bacterial RhinosinusitisHo-Jin Gwak, Hyeon A Lee, Jae Yeong Jeong, et al.Biodata Mining|January 15, 2025
MultiChem: predicting chemical properties using multi-view graph attention networkHeesang Moon, Mina RhoNucleic Acids Research|September 19, 2009
MGEScan-non-LTR: computational identification and classification of autonomous non-LTR retrotransposons in eukaryotic genomesMina Rho, Haixu TangScientific Reports|January 18, 2022
Multimodal deep learning applied to classify healthy and disease states of human microbiomeSeung Jae Lee, Mina RhoPageof 7