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Nature Communications|November 15, 2024
scPair: Boosting single cell multimodal analysis by leveraging implicit feature selection and single cell atlasesHongru Hu, Gerald QuonBiorxiv : the Preprint Server for Biology|September 15, 2025
Predicting emergent phenotypes from single cell populations using CELLECTIONHongru Hu, Siddhant Sanghi, Gerald QuonNature Communications|August 25, 2023
Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjectionNelson Johansen, Hongru Hu, Gerald QuonBiorxiv : the Preprint Server for Biology|June 12, 2025
sciLaMA: A Single-Cell Representation Learning Framework to Leverage Prior Knowledge from Large Language ModelsHongru Hu, Shuwen Zhang, Yongin Choi, et al.Biorxiv : the Preprint Server for Biology|June 12, 2025
A conditional generative model to disentangle morphological variation from batch effects in model organism imaging studiesRicardo M Valdarrago, Hongru Hu, Ruoxin Li, et al.Genome Biology|August 16, 2019
scAlign: a tool for alignment, integration, and rare cell identification from scRNA-seq dataNelson Johansen, Gerald QuonGenome Biology|September 11, 2019
scBFA: modeling detection patterns to mitigate technical noise in large-scale single-cell genomics dataRuoxin Li, Gerald QuonGenome Biology|November 23, 2019
Correction to: scBFA: modeling detection patterns to mitigate technical noise in large-scale single-cell genomics dataRuoxin Li, Gerald QuonBioinformatics (Oxford, England)|June 23, 2009
ISOLATE: a computational strategy for identifying the primary origin of cancers using high-throughput sequencingGerald Quon, Quaid MorrisMicrobiology Spectrum|March 6, 2024
Microbiome-based classification models for fresh produce safety and quality evaluationChao Liao, Luxin Wang, Gerald QuonPageof 5