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Scientific Reports|June 10, 2015
Comprehensive prediction of drug-protein interactions and side effects for the human proteomeHongyi Zhou, Mu Gao, Jeffrey SkolnickThe Journal of Physical Chemistry. B|January 26, 2012
Further evidence for the likely completeness of the library of solved single domain protein structuresJeffrey Skolnick, Hongyi Zhou, Michal BrylinskiScientific Reports|March 7, 2019
DESTINI: A deep-learning approach to contact-driven protein structure predictionMu Gao, Hongyi Zhou, Jeffrey SkolnickJournal of Chemical Information and Modeling|October 3, 2018
FINDSITEcomb2.0: A New Approach for Virtual Ligand Screening of Proteins and Virtual Target Screening of BiomoleculesHongyi Zhou, Hongnan Cao, Jeffrey SkolnickJournal of Chemical Information and Modeling|March 16, 2021
FRAGSITE: A Fragment-Based Approach for Virtual Ligand ScreeningHongyi Zhou, Hongnan Cao, Jeffrey SkolnickScientific Reports|December 3, 2022
PHEVIR: an artificial intelligence algorithm that predicts the molecular role of pathogens in complex human diseasesHongyi Zhou, Courtney Astore, Jeffrey SkolnickScientific Reports|March 21, 2025
A mode of action protein based approach that characterizes the relationships among most major diseasesHongyi Zhou, Brice Edelman, Jeffrey SkolnickJournal of Chemical Information and Modeling|March 3, 2026
GlueFinder: A Data-Driven Framework for the Rational Discovery of Molecular GluesJeffrey Skolnick, Bharath Srinivasan, Hongyi ZhouStructure (London, England : 1993)|June 2, 2015
Insights into Disease-Associated Mutations in the Human Proteome through Protein Structural AnalysisMu Gao, Hongyi Zhou, Jeffrey SkolnickPlos Computational Biology|February 17, 2026
MENDELSEEK: An algorithm that predicts mendelian genes and elucidates what makes them specialHongyi Zhou, Brice Edelman, Jeffrey SkolnickPageof 29