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Biorxiv : the Preprint Server for Biology|November 24, 2025
GlueFinder: A Data-Driven Framework for the Rational Discovery of Molecular GluesJeffrey Skolnick, Bharath Srinivasan, Hongyi ZhouProteins|July 30, 2009
Performance of the Pro-sp3-TASSER server in CASP8Hongyi Zhou, Shashi B Pandit, Jeffrey SkolnickScientific Reports|October 22, 2021
Prediction of severe adverse events, modes of action and drug treatments for COVID-19's complicationsCourtney Astore, Hongyi Zhou, Joshy Jacob, et al.Communications Biology|December 20, 2018
The crystal structure of a tetrahydrofolate-bound dihydrofolate reductase reveals the origin of slow product releaseHongnan Cao, Mu Gao, Hongyi Zhou, et al.Biorxiv : the Preprint Server for Biology|May 18, 2026
Understanding Substance Dependence: What Differentiates Addictive from Non-Addictive Drugs?Hargobind Singh, Hongyi Zhou, Samuel Skolnick, et al.Bioorganic & Medicinal Chemistry|August 28, 2016
Novel small molecule binders of human N-glycanase 1, a key player in the endoplasmic reticulum associated degradation pathwayBharath Srinivasan, Hongyi Zhou, Sreyoshi Mitra, et al.Journal of Chemical Information and Modeling|September 29, 2021
AlphaFold 2: Why It Works and Its Implications for Understanding the Relationships of Protein Sequence, Structure, and FunctionJeffrey Skolnick, Mu Gao, Hongyi Zhou, et al.Journal of Cheminformatics|June 18, 2014
Experimental validation of FINDSITE(comb) virtual ligand screening results for eight proteins yields novel nanomolar and micromolar bindersBharath Srinivasan, Hongyi Zhou, Julia Kubanek, et al.Journal of Structural Biology|September 21, 2010
The utility of geometrical and chemical restraint information extracted from predicted ligand-binding sites in protein structure refinementMichal Brylinski, Seung Yup Lee, Hongyi Zhou, et al.Communications Biology|August 25, 2022
LeMeDISCO is a computational method for large-scale prediction & molecular interpretation of disease comorbidityCourtney Astore, Hongyi Zhou, Bartosz Ilkowski, et al.Pageof 29