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Current Protocols in Nucleic Acid Chemistry
|
August 27, 2020
Synthesis of 5-Cyanomethyluridine (cnm<sup>5</sup> U) and 5-Cyanouridine (cn<sup>5</sup> U) Phosphoramidites and Their Incorporation into RNA Oligonucleotides
Song Mao, Hsu-Chun Tsai, Jia Sheng
Journal of Chemical Theory and Computation
|
January 11, 2023
ACES: Optimized Alchemically Enhanced Sampling
Tai-Sung Lee, Hsu-Chun Tsai, Abir Ganguly, et al.
Journal of Chemical Information and Modeling
|
June 20, 2020
Validation of Free Energy Methods in AMBER
Hsu-Chun Tsai, Yujun Tao, Tai-Sung Lee, et al.
Journal of Chemical Information and Modeling
|
November 30, 2022
AMBER Drug Discovery Boost Tools: Automated Workflow for Production Free-Energy Simulation Setup and Analysis (ProFESSA)
Abir Ganguly, Hsu-Chun Tsai, Mario Fernández-Pendás, et al.
Journal of Chemical Theory and Computation
|
January 9, 2023
AMBER Free Energy Tools: A New Framework for the Design of Optimized Alchemical Transformation Pathways
Hsu-Chun Tsai, Tai-Sung Lee, Abir Ganguly, et al.
Journal of Chemical Theory and Computation
|
July 17, 2020
Improved Alchemical Free Energy Calculations with Optimized Smoothstep Softcore Potentials
Tai-Sung Lee, Zhixiong Lin, Bryce K Allen, et al.
Journal of Chemical Information and Modeling
|
September 3, 2024
Improvements in Precision of Relative Binding Free Energy Calculations Afforded by the Alchemical Enhanced Sampling (ACES) Approach
Hsu-Chun Tsai, James Xu, Zhenyu Guo, et al.
Journal of Chemical Information and Modeling
|
January 17, 2026
A Relative Binding Free Energy Framework for Structurally Dissimilar Molecules
Hsu-Chun Tsai, Shi Zhang, Tai-Sung Lee, et al.
Chembiochem : a European Journal of Chemical Biology
|
October 9, 2018
Cyano Modification on Uridine Decreases Base-Pairing Stability and Specificity through Neighboring Disruption in RNA Duplex
Song Mao, Srivathsan V Ranganathan, Hsu-Chun Tsai, et al.
Journal of Chemical Information and Modeling
|
September 16, 2020
Alchemical Binding Free Energy Calculations in AMBER20: Advances and Best Practices for Drug Discovery
Tai-Sung Lee, Bryce K Allen, Timothy J Giese, et al.
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Showing results (1-10 of 10) with videos related to
Sort By:
Page
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Current Protocols in Nucleic Acid Chemistry
|
August 27, 2020
Synthesis of 5-Cyanomethyluridine (cnm<sup>5</sup> U) and 5-Cyanouridine (cn<sup>5</sup> U) Phosphoramidites and Their Incorporation into RNA Oligonucleotides
Song Mao, Hsu-Chun Tsai, Jia Sheng
Journal of Chemical Theory and Computation
|
January 11, 2023
ACES: Optimized Alchemically Enhanced Sampling
Tai-Sung Lee, Hsu-Chun Tsai, Abir Ganguly, et al.
Journal of Chemical Information and Modeling
|
June 20, 2020
Validation of Free Energy Methods in AMBER
Hsu-Chun Tsai, Yujun Tao, Tai-Sung Lee, et al.
Journal of Chemical Information and Modeling
|
November 30, 2022
AMBER Drug Discovery Boost Tools: Automated Workflow for Production Free-Energy Simulation Setup and Analysis (ProFESSA)
Abir Ganguly, Hsu-Chun Tsai, Mario Fernández-Pendás, et al.
Journal of Chemical Theory and Computation
|
January 9, 2023
AMBER Free Energy Tools: A New Framework for the Design of Optimized Alchemical Transformation Pathways
Hsu-Chun Tsai, Tai-Sung Lee, Abir Ganguly, et al.
Journal of Chemical Theory and Computation
|
July 17, 2020
Improved Alchemical Free Energy Calculations with Optimized Smoothstep Softcore Potentials
Tai-Sung Lee, Zhixiong Lin, Bryce K Allen, et al.
Journal of Chemical Information and Modeling
|
September 3, 2024
Improvements in Precision of Relative Binding Free Energy Calculations Afforded by the Alchemical Enhanced Sampling (ACES) Approach
Hsu-Chun Tsai, James Xu, Zhenyu Guo, et al.
Journal of Chemical Information and Modeling
|
January 17, 2026
A Relative Binding Free Energy Framework for Structurally Dissimilar Molecules
Hsu-Chun Tsai, Shi Zhang, Tai-Sung Lee, et al.
Chembiochem : a European Journal of Chemical Biology
|
October 9, 2018
Cyano Modification on Uridine Decreases Base-Pairing Stability and Specificity through Neighboring Disruption in RNA Duplex
Song Mao, Srivathsan V Ranganathan, Hsu-Chun Tsai, et al.
Journal of Chemical Information and Modeling
|
September 16, 2020
Alchemical Binding Free Energy Calculations in AMBER20: Advances and Best Practices for Drug Discovery
Tai-Sung Lee, Bryce K Allen, Timothy J Giese, et al.
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of 1