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Briefings in Bioinformatics|April 12, 2012
Semantic Web meets Integrative Biology: a surveyHuajun Chen, Tong Yu, Jake Y ChenBriefings in Bioinformatics|March 24, 2009
Semantic web for integrated network analysis in biomedicineHuajun Chen, Li Ding, Zhaohui Wu, et al.Computational and Mathematical Methods in Medicine|March 28, 2013
Ontology-oriented diagnostic system for traditional Chinese medicine based on relation refinementPeiqin Gu, Huajun Chen, Tong YuBiomed Research International|May 31, 2014
OWL reasoning framework over big biological knowledge networkHuajun Chen, Xi Chen, Peiqin Gu, et al.Personalized Medicine|June 26, 2010
Unraveling human complexity and disease with systems biology and personalized medicineStephen Naylor, Jake Y ChenArtificial Intelligence in Medicine|December 17, 2009
A GMM-IG framework for selecting genes as expression panel biomarkersMingyi Wang, Jake Y ChenMethods in Molecular Biology (Clifton, N.J.)|March 4, 2011
Data mining methods in Omics-based biomarker discoveryFan Zhang, Jake Y ChenFrontiers in Systems Biology|October 15, 2025
GETgene-AI: a framework for prioritizing actionable cancer drug targetsAdrian Gu, Jake Y ChenBMC Bioinformatics|December 15, 2011
HOMER: a human organ-specific molecular electronic repositoryFan Zhang, Jake Y ChenBMC Genomics|November 5, 2010
Discovery of pathway biomarkers from coupled proteomics and systems biology methodsFan Zhang, Jake Y ChenPageof 116