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Cell Host & Microbe|June 6, 2017
Comprehensive Mapping of HIV-1 Escape from a Broadly Neutralizing AntibodyAdam S Dingens, Hugh K Haddox, Julie Overbaugh, et al.
Elife|March 29, 2018
Mapping mutational effects along the evolutionary landscape of HIV envelopeHugh K Haddox, Adam S Dingens, Sarah K Hilton, et al.
Biorxiv : the Preprint Server for Biology|August 14, 2023
Jointly modeling deep mutational scans identifies shifted mutational effects among SARS-CoV-2 spike homologsHugh K Haddox, Jared G Galloway, Bernadeta Dadonaite, et al.
Biorxiv : the Preprint Server for Biology|May 4, 2026
Entrenchment of germline amino-acid differences in antibody affinity maturationNoam Harel, Kevin Sung, Will Dumm, et al.
The Journal of Physical Chemistry. B|March 19, 2021
The Role of Configurational Entropy in Miniprotein StabilityJan D Estrada Pabón, Hugh K Haddox, Greg Van Aken, et al.
Biorxiv : the Preprint Server for Biology|November 24, 2025
Separating selection from mutation in antibody language modelsFrederick A Matsen, Will Dumm, Kevin Sung, et al.
Plos Computational Biology|April 22, 2026
Using experimental results of protein design to guide biomolecular energy-function developmentHugh K Haddox, Gabriel J Rocklin, Francis C Motta, et al.
Proceedings of the National Academy of Sciences of the United States of America|October 3, 2022
Dissecting the stability determinants of a challenging de novo protein fold using massively parallel design and experimentationTae-Eun Kim, Kotaro Tsuboyama, Scott Houliston, et al.
Biorxiv : the Preprint Server for Biology|July 16, 2025
Nucleotide context models outperform protein language models for predicting antibody affinity maturationMackenzie M Johnson, Kevin Sung, Hugh K Haddox, et al.
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