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Biorxiv : the Preprint Server for Biology|February 23, 2026
ST-Analyzer: A Packaged Web and Command-Line Interface for Simulation Trajectory AnalysisNathan R Kern, Soohyung Park, Yiwei Cao, et al.Journal of Chemical Information and Modeling|December 18, 2020
Ligand-Binding-Site Refinement to Generate Reliable Holo Protein Structure Conformations from Apo StructuresHugo Guterres, Sang-Jun Park, Wei Jiang, et al.Journal of Computational Chemistry|January 25, 2019
CHARMM-GUI Nanodisc Builder for modeling and simulation of various nanodisc systemsYifei Qi, Jumin Lee, Jeffery B Klauda, et al.Journal of Chemical Information and Modeling|July 23, 2021
CHARMM-GUI LBS Finder & Refiner for Ligand Binding Site Prediction and RefinementHugo Guterres, Sang-Jun Park, Han Zhang, et al.The Journal of Physical Chemistry. B|August 5, 2018
Simulation Study of Occk5 Functional Properties in Pseudomonas aeruginosa Outer MembranesJoonseong Lee, Karunakar R Pothula, Ulrich Kleinekathöfer, et al.Biochemical and Biophysical Research Communications|May 5, 2010
NMR characterization of hydrophobic collapses in amyloidogenic unfolded states and their implications for amyloid formationKwang Hun Lim, Partha Nagchowdhuri, Thenmalarchelvi Rathinavelan, et al.Biophysical Journal|August 13, 2013
NMR-based simulation studies of Pf1 coat protein in explicit membranesXi Cheng, Sunhwan Jo, Francesca M Marassi, et al.Journal of Chemical Information and Modeling|November 10, 2021
CHARMM-GUI Ligand Designer for Template-Based Virtual Ligand Design in a Binding SiteHugo Guterres, Sang-Jun Park, Yiwei Cao, et al.Proteins|April 29, 2006
Protein-protein interactions in actin-myosin binding and structural effects of R405Q mutation: a molecular dynamics studyYuemin Liu, Megan Scolari, Wonpil Im, et al.Journal of Magnetic Resonance (San Diego, Calif. : 1997)|May 9, 2008
Application of solid-state NMR restraint potentials in membrane protein modelingJinhyuk Lee, Jianhan Chen, Charles L Brooks, et al.Pageof 34