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Nature Biotechnology|February 8, 2005
Detection of parallel functional modules by comparative analysis of genome sequencesHuiying Li, Matteo Pellegrini, David EisenbergPlos Computational Biology|September 13, 2008
Identifying cognate binding pairs among a large set of paralogs: the case of PE/PPE proteins of Mycobacterium tuberculosisRobert Riley, Matteo Pellegrini, David EisenbergPhilosophical Transactions of the Royal Society of London. Series B, Biological Sciences|March 10, 2006
Bioinformatic challenges for the next decade(s)David Eisenberg, Edward Marcotte, Andrew D McLachlan, et al.Genome Biology|September 4, 2003
Inference of protein function and protein linkages in Mycobacterium tuberculosis based on prokaryotic genome organization: a combined computational approachMichael Strong, Parag Mallick, Matteo Pellegrini, et al.BMC Systems Biology|December 17, 2009
Detecting coordinated regulation of multi-protein complexes using logic analysis of gene expressionEinat Sprinzak, Shawn J Cokus, Todd O Yeates, et al.Structure (London, England : 1993)|May 17, 2005
Crystal structure of a RuBisCO-like protein from the green sulfur bacterium Chlorobium tepidumHuiying Li, Michael R Sawaya, F Robert Tabita, et al.Genome Biology|May 7, 2004
Prolinks: a database of protein functional linkages derived from coevolutionPeter M Bowers, Matteo Pellegrini, Mike J Thompson, et al.Nucleic Acids Research|December 5, 2003
Visualization and interpretation of protein networks in Mycobacterium tuberculosis based on hierarchical clustering of genome-wide functional linkage mapsMichael Strong, Thomas G Graeber, Morgan Beeby, et al.Expert Opinion on Therapeutic Targets|April 2, 2003
Defining interacting partners for drug discoveryMatteo PellegriniMethods in Molecular Biology (Clifton, N.J.)|December 7, 2011
Using phylogenetic profiles to predict functional relationshipsMatteo PellegriniPageof 122