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Scientific Reports|July 23, 2024
PLMACPred prediction of anticancer peptides based on protein language model and wavelet denoising transformationMuhammad Arif, Saleh Musleh, Huma Fida, et al.
Methods (San Diego, Calif.)|August 22, 2024
StackDPPred: Multiclass prediction of defensin peptides using stacked ensemble learning with optimized featuresMuhammad Arif, Saleh Musleh, Ali Ghulam, et al.
ACS Omega|January 22, 2024
iMRSAPred: Improved Prediction of Anti-MRSA Peptides Using Physicochemical and Pairwise Contact-Energy Properties of Amino AcidsMuhammad Arif, Ge Fang, Huma Fida, et al.
Genomics & Informatics|February 7, 2026
AMP-CapsNet: a multi-view feature fusion approach for antimicrobial peptide prediction using capsule networksAli Ghulam, Mujeebu Rehman, Huma Fida, et al.
International Journal of Biological Macromolecules|August 14, 2025
tRNA is a molecular thermometer of species' optimal growth temperatureSebu Aboma Temesgen, Bakanina Kissanga Grace-Mercure, Basharat Ahmad, et al.
Bioinformatics (Oxford, England)|April 5, 2026
HybridGNN: A Graph Neural Network Approach for Human miRNA-Disease Association PredictionBasharat Ahmad, Muhammad Hammad Musaddiq, Sebu Aboma Temesgen, et al.
Pharmaceuticals (Basel, Switzerland)|November 27, 2025
Unveiling the Therapeutic Mechanisms of Chinese Herbs in Heart Failure: Integrating Network Pharmacology, Molecular Docking, and Simulation AnalysisBasharat Ahmad, Cai-Yi Ma, Grace-Mercure Bakanina Kissanga, et al.
Briefings in Bioinformatics|November 19, 2025
PCBert-Kla: an efficient prediction method for lysine lactylation sites based on ProtBert and fusion of physicochemical featuresHong-Qi Zhang, Yi-Xuan Qi, Huma Fida, et al.
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