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The Journal of Physical Chemistry. B|August 11, 2022
Improving All-Atom Force Field to Accurately Describe DNA G-Quadruplex LoopsHyeonjun Kim, Youngshang PakJournal of Chemical Information and Modeling|May 18, 2026
B-Z DNA Transitions under Z-DNA-Favoring Conditions: Benchmarking the OL21-vdW7 Force FieldHyeonjun Kim, Youngshang PakJournal of Chemical Theory and Computation|March 7, 2024
Three-State Diffusion Model of DNA Glycosylase Translocation along Stretched DNA as Revealed by Free Energy Landscapes at the All-Atom LevelHyeonjun Kim, Youngshang PakJournal of Chemical Theory and Computation|October 24, 2025
Ensemble-Based Precision Refinement of All-Atom Nucleic Acid Force Fields Guided by NMR NOE Pair-Distance MeasurementsHyeonjun Kim, Youngshang PakThe Journal of Physical Chemistry. B|December 3, 2024
Free Energy Landscape of Lesion Recognition by Human 8-Oxoguanine DNA N-Glycosylase 1: Mechanistic Insights into Detection and Processing of 8-Oxoguanine in DNAHyeonjun Kim, Youngshang PakJournal of Chemical Information and Modeling|December 26, 2024
Free Energy-Based Refinement of DNA Force Field via Modification of Multiple Nonbonding Energy TermsHyeonjun Kim, Youngshang PakJournal of Chemical Information and Modeling|May 20, 2024
Isomerization Pathways of a Mismatched Base Pair of A:8OG in Free Duplex DNAHyeonjun Kim, Youngshang PakJournal of Chemical Theory and Computation|February 8, 2020
Improving Temperature Generator in Parallel Tempering Simulation in the NPT ConditionChangwon Yang, Hyeonjun Kim, Youngshang PakJournal of Chemical Information and Modeling|October 2, 2023
Computational Probing of the Folding Mechanism of Human Telomeric G-Quadruplex DNAHyeonjun Kim, Eunae Kim, Youngshang PakJournal of Chemical Theory and Computation|March 10, 2021
Free-Energy Landscape of a pH-Modulated G·C Base Pair Transition from Watson-Crick to Hoogsteen State in Duplex DNAHyeonjun Kim, Changwon Yang, Youngshang PakPageof 6