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Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|June 15, 2005
A tool for analyzing mate pairs in assemblies (TAMPA)Ian M Dew, Brian Walenz, Granger SuttonBioinformatics (Oxford, England)|March 7, 2008
Consensus generation and variant detection by Celera AssemblerGennady Denisov, Brian Walenz, Aaron L Halpern, et al.Bioinformatics (Oxford, England)|May 10, 2011
Sim4db and Leaff: utilities for fast batch spliced alignment and sequence indexingBrian Walenz, Liliana FloreaBMC Bioinformatics|April 12, 2008
Gene identification and protein classification in microbial metagenomic sequence data via incremental clusteringShibu Yooseph, Weizhong Li, Granger SuttonGenome Research|January 6, 2005
Gene and alternative splicing annotation with AIRLiliana Florea, Valentina Di Francesco, Jason Miller, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|April 10, 2004
1001 optimal PDB structure alignments: integer programming methods for finding the maximum contact map overlapAlberto Caprara, Robert Carr, Sorin Istrail, et al.Genomics|March 10, 2010
Assembly algorithms for next-generation sequencing dataJason R Miller, Sergey Koren, Granger SuttonBMC Bioinformatics|September 14, 2010
An algorithm for automated closure during assemblySergey Koren, Jason R Miller, Brian P Walenz, et al.Bioinformatics (Oxford, England)|December 7, 2007
Assembly reconciliationAleksey V Zimin, Douglas R Smith, Granger Sutton, et al.Nucleic Acids Research|August 21, 2012
PanOCT: automated clustering of orthologs using conserved gene neighborhood for pan-genomic analysis of bacterial strains and closely related speciesDerrick E Fouts, Lauren Brinkac, Erin Beck, et al.Pageof 6