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Database : the Journal of Biological Databases and Curation|December 22, 2018
Foundry: a message-oriented, horizontally scalable ETL system for scientific data integration and enhancementIbrahim Burak Ozyurt, Jeffrey S GretheDatabase : the Journal of Biological Databases and Curation|January 12, 2020
Bio-AnswerFinder: a system to find answers to questions from biomedical textsIbrahim Burak Ozyurt, Anita Bandrowski, Jeffrey S GrethePlos One|January 6, 2016
Resource Disambiguator for the Web: Extracting Biomedical Resources and Their Citations from the Scientific LiteratureIbrahim Burak Ozyurt, Jeffrey S Grethe, Maryann E Martone, et al.IEEE/ACM Transactions on Computational Biology and Bioinformatics|August 8, 2012
Automatic identification and classification of noun argument structures in biomedical literatureIbrahim Burak OzyurtBiorxiv : the Preprint Server for Biology|October 28, 2024
Automatic Detection and Extraction of Key Resources from Tables in Biomedical PapersIbrahim Burak Ozyurt, Anita BandrowskiBiodata Mining|March 21, 2025
Automatic detection and extraction of key resources from tables in biomedical papersIbrahim Burak Ozyurt, Anita BandrowskiComputing in Science & Engineering|August 12, 2025
Comparing the Use of Research Resource Identifiers and Natural Language Processing for Citation of Databases, Software, and Other Digital ArtifactsChun-Nan Hsu, Anita E Bandrowski, Thomas H Gillespie, et al.Plos Computational Biology|May 27, 2021
Antibody Watch: Text mining antibody specificity from the literatureChun-Nan Hsu, Chia-Hui Chang, Thamolwan Poopradubsil, et al.Journal of Medical Internet Research|June 27, 2022
Establishing Institutional Scores With the Rigor and Transparency Index: Large-scale Analysis of Scientific Reporting QualityJoe Menke, Peter Eckmann, Ibrahim Burak Ozyurt, et al.Neural Networks : the Official Journal of the International Neural Network Society|November 19, 2003
Towards a formalization of disease-specific ontologies for neuroinformaticsAmarnath Gupta, Bertram Ludäscher, Jeffrey S Grethe, et al.Pageof 5