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Plos One|July 7, 2023
SUNi mutagenesis: Scalable and uniform nicking for efficient generation of variant librariesTaylor L Mighell, Ignasi Toledano, Ben LehnerGenome Biology|March 4, 2014
Inferring gene function from evolutionary change in signatures of translation efficiencyAnita Krisko, Tea Copic, Toni Gabaldón, et al.Nature Genetics|October 30, 2019
The impact of nonsense-mediated mRNA decay on genetic disease, gene editing and cancer immunotherapyRik G H Lindeboom, Michiel Vermeulen, Ben Lehner, et al.Cell|March 18, 2014
Synonymous mutations frequently act as driver mutations in human cancersFran Supek, Belén Miñana, Juan Valcárcel, et al.Genome Biology|June 24, 2016
MUFFINN: cancer gene discovery via network analysis of somatic mutation dataAra Cho, Jung Eun Shim, Eiru Kim, et al.Nature Communications|June 28, 2022
The impact of rare germline variants on human somatic mutation processesMischan Vali-Pour, Solip Park, Jose Espinosa-Carrasco, et al.Journal of Molecular Evolution|November 6, 2015
The Code of Silence: Widespread Associations Between Synonymous Codon Biases and Gene FunctionFran SupekMolecular Systems Biology|January 19, 2026
The DNA dialect: a comprehensive guide to pretrained genomic language modelsMarcell Veiner, Fran SupekMethods in Molecular Biology (Clifton, N.J.)|November 5, 2016
Visualizing GO AnnotationsFran Supek, Nives ŠkuncaBioinformatics (Oxford, England)|April 3, 2004
INCA: synonymous codon usage analysis and clustering by means of self-organizing mapFran Supek, Kristian VlahovicekPageof 18